A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
☆18Mar 19, 2023Updated 3 years ago
Alternatives and similar repositories for TE_finder
Users that are interested in TE_finder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads☆12May 2, 2019Updated 7 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- ☆19Feb 15, 2024Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆46Sep 13, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bulked-Segregant Analysis using vcf file with or without parents☆34Apr 1, 2026Updated 6 months ago
- De novo annotation of young retrotransposons☆46Apr 24, 2026Updated 6 months ago
- Evolutionary Bioinformatics Toolkit (EBT)☆11Jul 14, 2020Updated 6 years ago
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 3 years ago
- gapped-kmer based whole genome alignment software☆11Jun 11, 2026Updated 4 months ago
- protocols for bioinformatics data analysis☆10Sep 22, 2020Updated 6 years ago
- A mosaic genome painting tool for plant genomes☆19May 6, 2026Updated 5 months ago
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated 2 years ago
- scripts for a Genetics Map software☆11Jan 7, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- ☆16Oct 9, 2024Updated 2 years ago
- Reference-agnostic Representation and Visualization of Pan-genomes☆19Sep 16, 2021Updated 5 years ago
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago
- An integrated high performance bioinformatics toolkit☆23Apr 24, 2019Updated 7 years ago
- Mixed Model Package For Genome-wide association mapping.☆18Updated this week
- ☆33Oct 21, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Easy to Annotate Helitrons Unix-like command line.☆10Feb 14, 2024Updated 2 years ago
- ☆15Jul 3, 2018Updated 8 years ago
- official repository for the UEA sRNA Workbench☆10May 31, 2023Updated 3 years ago
- ☆27Jul 26, 2026Updated 3 months ago
- Library and tools to deal with polyploid genomics☆11May 10, 2021Updated 5 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated 2 years ago
- Perform GWAS with gemma in a simple pipeline☆28Apr 26, 2025Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 7 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆27Sep 14, 2020Updated 6 years ago
- Pipeline for linkage map construction from NGS data☆13Feb 10, 2023Updated 3 years ago
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆36Jul 15, 2026Updated 3 months ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- satMiner: A Toolkit to NGS satellite DNA mining and analysis☆12Sep 30, 2026Updated last month
- B73Ab10 genome assembly methods☆17Jan 21, 2022Updated 4 years ago