fei0810 / Triti-MapLinks
A Snakemake-based pipeline for gene mapping in Triticeae.
☆11Updated 3 years ago
Alternatives and similar repositories for Triti-Map
Users that are interested in Triti-Map are comparing it to the libraries listed below
Sorting:
- DensityMap is perl tool for the visualization of features density along chromosomes☆19Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 8 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 9 months ago
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago
- Plant small RNA target prediction tool☆26Updated 9 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 3 years ago
- ☆63Updated last year
- 361 Division - Scientific Training, Education and Learning☆28Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆25Updated 2 years ago
- an R/Shiny application for interactive creation of Circos plot☆50Updated 2 years ago
- ☆22Updated 7 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Long read to rMATS☆32Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- Evolutionary Transcriptomics with R☆47Updated last week
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 8 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Updated 2 years ago
- Algorithm to detect germline and de novo transposon insertions☆31Updated 5 months ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- web documentation for Trinotate☆48Updated 3 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated 9 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- KOBAS: a command line tool for identifying significant pathways from genomic data☆32Updated 15 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last month