fei0810 / Triti-MapLinks
A Snakemake-based pipeline for gene mapping in Triticeae.
☆11Updated 3 years ago
Alternatives and similar repositories for Triti-Map
Users that are interested in Triti-Map are comparing it to the libraries listed below
Sorting:
- DensityMap is perl tool for the visualization of features density along chromosomes☆18Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 8 months ago
- fastx-utils using klib☆20Updated 5 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆25Updated 2 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 10 months ago
- Long read to rMATS☆32Updated 2 years ago
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago
- RPKM for RNASeq counts☆16Updated 5 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Updated 2 years ago
- Plant small RNA target prediction tool☆27Updated 9 years ago
- A simple plot library☆52Updated 8 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- ☆14Updated 7 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 3 years ago
- ☆63Updated last year
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated 10 months ago
- Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.☆17Updated 4 years ago
- iTAK☆48Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- allele specific DNA methylation haplotype region☆13Updated 2 years ago
- Tools for analyzing DNA methylation data☆44Updated last month
- 361 Division - Scientific Training, Education and Learning☆28Updated 5 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- ☆15Updated 5 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Evolutionary Transcriptomics with R☆47Updated this week
- My collection of light bioinformatics analysis pipelines for specific tasks☆79Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago