dongling-hub / Wild-rice-Pangenome-ProjectLinks
This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analysis of a pangenome reference of wild and cultivated rice. Below is a directory guide outlining the contents and purpose of each script.
☆18Updated 3 months ago
Alternatives and similar repositories for Wild-rice-Pangenome-Project
Users that are interested in Wild-rice-Pangenome-Project are comparing it to the libraries listed below
Sorting:
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆43Updated 2 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆29Updated 7 months ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆56Updated last year
- DNA序列比对结果 可视化展示工具☆52Updated 2 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆55Updated last month
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- Genome haplotype assembly and assessment method☆12Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 10 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- Scripts that used in our chicken T2T manuscript.☆20Updated 2 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆22Updated 3 months ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- Genome annotation pipeline☆59Updated last year
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Hapmap-v1☆12Updated 5 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆18Updated 2 years ago
- ☆15Updated 5 years ago
- a Semi-automated pipeline for assembling T2T genome☆19Updated 2 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- ☆35Updated 2 weeks ago
- Useful bioinformatic scripts☆57Updated 8 months ago
- ☆14Updated 5 years ago
- A novel genome assembly pipeline based on deep learning☆62Updated 8 months ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- ☆40Updated 2 years ago
- ☆42Updated last year
- A collection of tools for Genome Assembly analysis☆20Updated last year
- NLR-Annotator upload☆69Updated 2 years ago