akiomiyao / tif
Transposon Insertion Finder - Detection of new TE insertions in NGS data
☆20Updated 2 years ago
Alternatives and similar repositories for tif:
Users that are interested in tif are comparing it to the libraries listed below
- Functions to compare a SV call sets against a truth set.☆29Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- A comprehensive collection of long inverted repeats in 424 eukaryotic genomes☆16Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- transposable element typing pipeline☆17Updated last year
- All JBrowse plugins created by Brigitte Hofmeister☆10Updated 7 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- toolkit to process gtf files☆17Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago
- A transposition caller.☆10Updated last year
- ☆23Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 9 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Evolutionary Transcriptomics with R☆43Updated this week
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- ☆15Updated 4 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 4 months ago
- Population-wide Deletion Calling☆35Updated 2 weeks ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 7 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago