akiomiyao / tifLinks
Transposon Insertion Finder - Detection of new TE insertions in NGS data
☆20Updated 5 months ago
Alternatives and similar repositories for tif
Users that are interested in tif are comparing it to the libraries listed below
Sorting:
- A comprehensive collection of long inverted repeats in 424 eukaryotic genomes☆16Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Updated 7 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- Integrative analysis of structural variations.☆40Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆27Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Evolutionary Transcriptomics with R☆46Updated 2 weeks ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 4 months ago
- Tools for merging Tandem Repeat VCF files☆35Updated 6 months ago
- A series of scripts to automate sequence workflows☆19Updated 5 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- ☆28Updated 2 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆32Updated 3 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- Repo to analyze population genetic data with many different methods☆15Updated 6 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 4 years ago
- Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format☆21Updated 15 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes