Alternatives and similar repositories for twn_tsn

Users that are interested in twn_tsn are comparing it to the libraries listed below

• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• flemingtonlab / SpliceTools
  ☆17Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 6 months ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated 2 years ago
• Xinglab / rMATS-long
  ☆30Updated 8 months ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆20Updated last week
• smithlabcode / riborex
  Riborex: Fast and flexible identification of differential translation from Ribo-seq data
  ☆10Updated 4 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆35Updated 8 months ago
• dozmorovlab / HiCcompare
  Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…
  ☆22Updated 2 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated last year
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 months ago
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆28Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆43Updated 3 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated last year
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 10 months ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated 3 weeks ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 7 years ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated last year
• Shicheng-Guo / HowtoBook
  Readme
  ☆10Updated 5 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• Jfortin1 / TCGA_AB_Compartments
  A/B compartments for 12 cancer types estimated from TCGA methylation data
  ☆20Updated 8 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆39Updated last year
• IrinaVKuznetsova / CirGO
  ☆21Updated last year