battle-lab / twn_tsnLinks
Transcriptome-wide network
☆16Updated 6 years ago
Alternatives and similar repositories for twn_tsn
Users that are interested in twn_tsn are comparing it to the libraries listed below
Sorting:
- ☆17Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- ☆15Updated 2 years ago
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆10Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- ☆23Updated 4 years ago
- ☆34Updated this week
- a set of NGS pipelines☆24Updated 3 weeks ago
- Workflow for Sequenza, cellularity and ploidy☆24Updated 3 months ago
- Filter and prioritize fusion calls☆20Updated last year
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- DriverPower☆26Updated 10 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 6 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 8 months ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 2 weeks ago
- ☆10Updated 4 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- ☆23Updated 8 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Updated 5 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago