hyphaltip / genome-scripts
Genome Scripts used in fungal comparative genomics
☆65Updated 4 years ago
Alternatives and similar repositories for genome-scripts:
Users that are interested in genome-scripts are comparing it to the libraries listed below
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- Same species annotation lift over pipeline.☆96Updated last year
- web documentation for Trinotate☆48Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 6 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 weeks ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated 10 months ago
- Synteny Imager☆60Updated 4 months ago
- A program to call variants from genome alignment☆77Updated 10 months ago
- NLR-Annotator upload☆62Updated last year
- ☆43Updated 8 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆37Updated 4 years ago
- ☆70Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆72Updated 7 months ago
- Genome Annotation Without Nightmares☆43Updated last year
- Genomic related tools☆71Updated 3 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆69Updated 2 years ago
- Combined de novo transcriptome assembly - multiple assemblers - multiple parameters☆18Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆95Updated last year
- ☆76Updated 5 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆53Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆48Updated 4 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆114Updated 4 years ago