Alternatives and similar repositories for GWAS

Users that are interested in GWAS are comparing it to the libraries listed below

• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 3 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 6 months ago
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year
• AppliedBioinformatics / Brassica_oleracea_rapa_napus_code
  Code for the Brassica oleracea/rapa/napus genomic comparison
  ☆16Updated 4 years ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆17Updated 5 years ago
• GonzalezLab / T-lex3
  ☆15Updated 5 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 5 months ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆18Updated 8 years ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated last year
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆17Updated 3 years ago
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• lh3 / treebest
  TreeBeST: Tree Building guided by Species Tree
  ☆14Updated 14 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆27Updated 6 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 10 months ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 4 months ago
• YTLogos / ttplot
  Tao Yan's Plot Toolkit
  ☆12Updated 6 years ago
• GenisGE / evalAdmix
  ☆15Updated last year
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• njau-sri / rtm-gwas
  An innovative GWAS procedure for studies on germplasm population and plant breeding
  ☆13Updated 4 years ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆18Updated 5 years ago
• jdaron / CLARI-TE
  ☆11Updated 10 years ago
• hemstrow / snpR
  ☆31Updated last month
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 7 years ago
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 4 years ago
• schneebergerlab / GameteBinning
  ☆12Updated 4 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• oeco28 / Cacao_Genomics
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆11Updated 7 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year