meyer-lab-cshl / PhenotypeSimulatorLinks
☆29Updated 4 months ago
Alternatives and similar repositories for PhenotypeSimulator
Users that are interested in PhenotypeSimulator are comparing it to the libraries listed below
Sorting:
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Materials for Spring 2019 Applied Genomics Course☆21Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 6 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- ☆27Updated 5 months ago
- ☆32Updated 3 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Genomic data interpretation and visualization Workshop☆21Updated 2 weeks ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Simulation of rare and common variants based on 1000 genomes data☆19Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- ☆16Updated 8 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- ☆46Updated 4 months ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- Generalized linear Mixed Model Association Tests☆44Updated last week
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- ☆29Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year