A series of scripts to automate sequence workflows
☆18Sep 10, 2026Updated last week
Alternatives and similar repositories for sequence_handling
Users that are interested in sequence_handling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 8 years ago
- ☆16Mar 20, 2023Updated 3 years ago
- Utilities for analyzing next generation sequencing data.☆16May 7, 2021Updated 5 years ago
- ☆18Nov 26, 2023Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Jun 12, 2023Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Rescale genetic polymorphism data to match a common sample size.☆15Nov 4, 2021Updated 4 years ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 5 months ago
- ☆13May 16, 2016Updated 10 years ago
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- GWAS analysis process based on EMMAX software☆21Dec 12, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆10Feb 25, 2024Updated 2 years ago
- Machine learning workshop materials☆16Nov 19, 2024Updated last year
- Bedfile perturbation tool☆17Mar 6, 2026Updated 6 months ago
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- toolkit to process gtf files☆17Dec 24, 2021Updated 4 years ago
- Repository☆10Oct 23, 2024Updated last year
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆21Aug 10, 2026Updated last month
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 5 years ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- machine learning applications for dadi☆16Jan 23, 2025Updated last year
- ☆29Sep 23, 2019Updated 6 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jun 18, 2026Updated 3 months ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆12Sep 28, 2018Updated 7 years ago
- ☆10Apr 10, 2016Updated 10 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆33Mar 18, 2014Updated 12 years ago
- PHYLIP package starting with version 4.0a☆20Sep 4, 2026Updated 2 weeks ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- ☆10Mar 4, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…☆30Sep 13, 2023Updated 3 years ago
- Notes by Markdown in HZAU Bioinformatics Courses☆15Dec 16, 2025Updated 9 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆28Feb 28, 2024Updated 2 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆11Sep 17, 2020Updated 6 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Mar 20, 2023Updated 3 years ago