Alternatives and similar repositories for sequence_handling

Users that are interested in sequence_handling are comparing it to the libraries listed below

• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 6 months ago
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated last year
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆24Updated 3 years ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆45Updated this week
• slzarate / parliament2
  Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
  ☆22Updated 3 years ago
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 7 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• jmonlong / PopSV
  Population-based detection of structural variation from High-Throughput Sequencing.
  ☆32Updated 3 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 3 months ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• jmw86069 / splicejam
  Sashimi plots for RNA-seq data using detected transcripts
  ☆29Updated 6 months ago
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 3 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 7 months ago
• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆15Updated 2 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated last year
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆51Updated 4 years ago
• riverlee / MitoSeek
  Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
  ☆41Updated 6 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated 2 months ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 3 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated 2 weeks ago
• NovembreLab / eems-around-the-world
  Repo to analyze population genetic data with many different methods
  ☆15Updated 5 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆30Updated 6 months ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆38Updated last year
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 10 months ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• gosianow / DRIMSeq
  Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…
  ☆11Updated 5 years ago