A series of scripts to automate sequence workflows
☆19Jul 16, 2026Updated this week
Alternatives and similar repositories for sequence_handling
Users that are interested in sequence_handling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- ☆15Mar 20, 2023Updated 3 years ago
- Utilities for analyzing next generation sequencing data.☆16May 7, 2021Updated 5 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆12Jun 12, 2023Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Rescale genetic polymorphism data to match a common sample size.☆16Nov 4, 2021Updated 4 years ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 4 months ago
- ☆13May 16, 2016Updated 10 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- GWAS analysis process based on EMMAX software☆20Dec 12, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆20Mar 31, 2026Updated 3 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- Machine learning workshop materials☆16Nov 19, 2024Updated last year
- Bedfile perturbation tool☆17Mar 6, 2026Updated 4 months ago
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- toolkit to process gtf files☆17Dec 24, 2021Updated 4 years ago
- Repository☆10Oct 23, 2024Updated last year
- CameraTrapDetector: Detect, classify, and count animals in camera trap images☆16Feb 20, 2025Updated last year
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- A deformable CNN model that accepts multiple sensor inputs and predicts multiple continuous plant trait outputs. SOTA on the 2021 Autonom…☆11Jun 30, 2022Updated 4 years ago
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- ☆29Sep 23, 2019Updated 6 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jun 18, 2026Updated last month
- ☆10Apr 10, 2016Updated 10 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆12Sep 28, 2018Updated 7 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Mar 18, 2014Updated 12 years ago
- PHYLIP package starting with version 4.0a☆20Jun 28, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- Notes by Markdown in HZAU Bioinformatics Courses☆14Dec 16, 2025Updated 7 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆29Feb 28, 2024Updated 2 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Mar 20, 2023Updated 3 years ago