MorrellLAB / sequence_handlingLinks
A series of scripts to automate sequence workflows
☆19Updated 7 months ago
Alternatives and similar repositories for sequence_handling
Users that are interested in sequence_handling are comparing it to the libraries listed below
Sorting:
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 9 months ago
- Repository for pipeline code☆26Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Direct RNA publication scripts☆11Updated 8 years ago
- ☆21Updated 3 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 7 months ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- Evolutionary Transcriptomics with R☆47Updated this week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Updated 5 years ago
- Utilities for analyzing next generation sequencing data.☆15Updated 4 years ago
- Adapters for trimming☆30Updated 6 years ago
- ☆23Updated 2 months ago
- Sweep Inference Framework (controlling for correlation)☆28Updated last year
- toolkit to process gtf files☆17Updated 4 years ago
- ☆29Updated 6 years ago
- ☆11Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆27Updated last year
- Repo to analyze population genetic data with many different methods☆15Updated 6 years ago
- ☆51Updated 6 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19Updated 3 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 7 years ago
- ☆21Updated last year