SamBuckberry / RUN-WGCNA
Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
☆28Updated 9 years ago
Alternatives and similar repositories for RUN-WGCNA:
Users that are interested in RUN-WGCNA are comparing it to the libraries listed below
- documentation for trackViewer☆29Updated 5 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆16Updated 7 years ago
- ☆38Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Summer school course materials collection☆25Updated 6 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- R package wrapping bedtools☆39Updated 3 weeks ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆15Updated 4 years ago
- Tool for RNA-Seq analysis.☆38Updated 3 years ago
- Motif manipulation functions for R.☆28Updated 5 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 7 months ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)☆20Updated 4 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆22Updated 2 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)☆13Updated 4 years ago