SamBuckberry / RUN-WGCNA
Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
☆28Updated 9 years ago
Alternatives and similar repositories for RUN-WGCNA:
Users that are interested in RUN-WGCNA are comparing it to the libraries listed below
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated last week
- documentation for trackViewer☆29Updated 5 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last week
- Differential ATAC-seq toolkit☆27Updated last year
- Motif manipulation functions for R.☆28Updated 4 months ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- An R for fast and flexible DNA methylation analysis☆31Updated 7 months ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- ☆29Updated 5 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- R package wrapping bedtools☆38Updated last month
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- ☆40Updated 6 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30Updated 6 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 3 months ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A snakemake pipeline for 10X genomics cellranger☆20Updated 3 months ago
- ☆36Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Summer school course materials collection☆25Updated 6 years ago