SamBuckberry / RUN-WGCNALinks
Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
☆28Updated 10 years ago
Alternatives and similar repositories for RUN-WGCNA
Users that are interested in RUN-WGCNA are comparing it to the libraries listed below
Sorting:
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- An R interface to the MEME Suite☆52Updated 3 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆39Updated 3 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆30Updated 6 months ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- documentation for trackViewer☆29Updated 6 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 6 months ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 6 months ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- Differential Count Data Analysis Toolbox☆61Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Workshop • Analysis of RNA-seq data☆36Updated last year
- ☆41Updated 7 years ago
- Genomic data interpretation and visualization Workshop☆21Updated 3 weeks ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆65Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago