Alternatives and similar repositories for HiTMaP

Users that are interested in HiTMaP are comparing it to the libraries listed below

• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆47Updated last month
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆19Updated this week
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆34Updated 4 years ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 7 months ago
• SmythLab / limpa
  Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…
  ☆20Updated this week
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 6 months ago
• pnnl / leapR
  ☆18Updated this week
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆28Updated 3 weeks ago
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆68Updated 2 months ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆89Updated last week
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated last month
• jpquast / protti
  Picotti lab data analysis package.
  ☆66Updated this week
• ipb-halle / MetFragR
  R package for MetFrag
  ☆24Updated 8 years ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆99Updated 5 months ago
• pmartR / pmartR
  The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…
  ☆48Updated 3 months ago
• prafols / rMSIproc
  rMSI processing methods using C++
  ☆11Updated 4 years ago
• sneumann / mzR
  This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…
  ☆46Updated last month
• broadinstitute / protigy
  Proteomics Toolset for Integrative Data Analysis
  ☆26Updated 3 months ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆24Updated 9 months ago
• cox-labs / PerseusR
  R package for easy interop between Perseus and R
  ☆15Updated 3 years ago
• Nesvilab / TMT-Integrator
  A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.
  ☆13Updated last year
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆21Updated 2 years ago
• slfan2013 / Shiny-SERRF
  ☆12Updated 4 years ago
• arnesmits / DEP
  DEP package
  ☆30Updated 3 years ago
• casecpb / KSEA
  Kinase-Substrate Enrichment Analysis (KSEA) App
  ☆10Updated 8 years ago
• MonashProteomics / FragPipe-Analyst
  Documentation is available here:
  ☆24Updated last month
• tidymass / tidymass
  tidymass
  ☆60Updated last week
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago
• wangshisheng / NAguideR
  NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses
  ☆51Updated 5 months ago