Alternatives and similar repositories for Spectre

Users that are interested in Spectre are comparing it to the libraries listed below

• saeyslab / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆28Updated 3 months ago
• drighelli / SpatialExperiment
  ☆66Updated last month
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆95Updated 4 months ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 6 months ago
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆67Updated last year
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆77Updated 3 years ago
• dynverse / anndata
  Annotated multivariate observation data in R
  ☆48Updated last month
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• carmonalab / ProjecTILs_CaseStudies
  A repository of case studies using ProjecTILs
  ☆14Updated 11 months ago
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆58Updated 4 years ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆70Updated 11 months ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• Elisseeff-Lab / domino
  A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…
  ☆17Updated 7 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆92Updated 7 months ago
• saeyslab / CytoNorm
  R library to normalize cytometry data
  ☆37Updated 3 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated this week
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆50Updated last year
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆58Updated this week
• Teichlab / cellity
  ☆37Updated 8 years ago
• ludvigla / semla
  ☆88Updated last week
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆27Updated last week
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆41Updated 3 years ago
• scverse / anndataR
  AnnData interoperability in R
  ☆84Updated this week
• markrobinsonuzh / cytofWorkflow
  ☆16Updated last year
• saezlab / mistyR
  Multiview Intercellular SpaTial modeling framework
  ☆61Updated last month
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆123Updated 2 months ago
• xleizi / easySCF
  ☆41Updated 3 weeks ago
• LungCellAtlas / HLCA
  ☆60Updated 2 years ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆33Updated last month