Alternatives and similar repositories for Spectre

Users that are interested in Spectre are comparing it to the libraries listed below

• saeyslab / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆29Updated 2 months ago
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆80Updated 3 years ago
• ludvigla / semla
  ☆94Updated 3 weeks ago
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆67Updated last year
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆97Updated 3 weeks ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆94Updated 10 months ago
• saezlab / mistyR
  Multiview Intercellular SpaTial modeling framework
  ☆68Updated 4 months ago
• drighelli / SpatialExperiment
  ☆71Updated 4 months ago
• FertigLab / CoGAPS
  Bayesian MCMC matrix factorization algorithm
  ☆69Updated 2 weeks ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆39Updated 2 years ago
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆58Updated 4 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated last year
• saeyslab / CytoNorm
  R library to normalize cytometry data
  ☆37Updated 6 months ago
• Nanostring-Biostats / GeomxTools
  Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…
  ☆45Updated last week
• zktuong / ktplotspy
  Python library for plotting Cellphonedb results. Ported from ktplots R package.
  ☆55Updated this week
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆38Updated 4 months ago
• Elisseeff-Lab / domino
  A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…
  ☆17Updated 10 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆42Updated this week
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆72Updated last year
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆88Updated 10 months ago
• dynverse / anndata
  Annotated multivariate observation data in R
  ☆50Updated 4 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆87Updated 4 months ago
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆27Updated last week
• gdagstn / borges
  Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data
  ☆18Updated 3 months ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 6 months ago
• maggiecrow / MetaNeighbor
  ☆48Updated 7 years ago
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆55Updated last week
• scverse / anndataR
  AnnData interoperability in R
  ☆116Updated this week
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆50Updated 2 years ago
• milescsmith / ReductionWrappers
  R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
  ☆36Updated 9 months ago