Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
☆41Dec 21, 2021Updated 4 years ago
Alternatives and similar repositories for COVIDPBMC
Users that are interested in COVIDPBMC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of scripts for analysis of pan fetal immune atlas☆30Aug 11, 2022Updated 3 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆125Updated this week
- ☆12Jan 31, 2023Updated 3 years ago
- Processing workflow for COVID-19 single cell data☆17Dec 23, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Apr 16, 2021Updated 5 years ago
- ☆18Jan 29, 2022Updated 4 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Jan 30, 2026Updated 2 months ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Repository detailing updated allowlisting and clonal analysis workflow☆10Feb 1, 2025Updated last year
- Single-Cell Inference of Class Switch Recombination☆22Feb 11, 2026Updated 2 months ago
- A docker image for single-cell analysis☆107Apr 7, 2026Updated last week
- Normalize CITEseq Data☆70Nov 9, 2025Updated 5 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆237Feb 12, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆11Jul 11, 2024Updated last year
- ☆63Aug 26, 2025Updated 7 months ago
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆13May 4, 2022Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆22May 21, 2024Updated last year
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 3 years ago
- Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets☆14Nov 21, 2025Updated 4 months ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- ☆14Jan 25, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated 2 months ago
- Cloud-based molecular docking for everyone☆12Jul 1, 2024Updated last year
- ☆12Jun 11, 2023Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- spatially aware scalable and accurate tool for spot deconvolution and clustering in spatial transcriptomics☆14Aug 12, 2024Updated last year
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 7 months ago
- Molecular interactions inference from single-cell multi-omics data☆31Jan 14, 2026Updated 3 months ago
- [Deprectated, use vdjmatch2 instead] ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated last month
- T/B cell receptor sequencing analysis notes☆275Dec 1, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆293Nov 10, 2024Updated last year
- A package to help convert different single-cell data formats to each other☆462Feb 20, 2026Updated last month
- Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma☆21Aug 15, 2021Updated 4 years ago
- R package for the analysis of single-cell immune repertoires☆45Feb 7, 2025Updated last year
- ☆34Apr 11, 2025Updated last year
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆59Jun 9, 2025Updated 10 months ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year