scCOVID-19 / COVIDPBMC
Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
☆40Updated 3 years ago
Alternatives and similar repositories for COVIDPBMC:
Users that are interested in COVIDPBMC are comparing it to the libraries listed below
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 5 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- scWGCNA☆58Updated 2 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- ☆40Updated 3 years ago
- ☆30Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 10 months ago
- ☆37Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆40Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆25Updated this week
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆34Updated 4 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- ☆59Updated 5 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆44Updated 2 months ago
- ☆61Updated 8 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Code repository for single cell RNA-seq☆34Updated 4 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 4 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 3 months ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆33Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆75Updated 6 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 11 months ago