Alternatives and similar repositories for Cancer_Microbiome_Reanalyzed

Users that are interested in Cancer_Microbiome_Reanalyzed are comparing it to the libraries listed below

• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆17Updated last year
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 3 years ago
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆17Updated 3 months ago
• datapplab / SBGNview
  ☆28Updated 2 years ago
• SchlossLab / Sze_Obesity_mBio_2016
  ☆12Updated 8 years ago
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆13Updated 2 years ago
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆20Updated last month
• XPRESSyourself / XPRESSpipe
  An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
  ☆13Updated last year
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 5 months ago
• qbic-pipelines / rnadeseq
  Differential gene expression analysis and pathway analysis of RNAseq data
  ☆32Updated 4 months ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆35Updated last week
• crazyhottommy / awesome-long-reads
  tools and notes for long reads analysis
  ☆24Updated 7 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• pachterlab / RMEJLBASBMP_2024
  Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
  ☆20Updated 9 months ago
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• BIMSBbioinfo / pigx_rnaseq
  Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
  ☆20Updated 10 months ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated last month
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• csoneson / alevinQC
  Create QC and summary reports for Alevin output
  ☆31Updated 3 weeks ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆26Updated last year
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆33Updated last year
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆29Updated 5 months ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated last year
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆29Updated 4 years ago
• zanglab / SICER2
  ☆23Updated 8 months ago