An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
☆13Jul 2, 2024Updated last year
Alternatives and similar repositories for XPRESSpipe
Users that are interested in XPRESSpipe are comparing it to the libraries listed below
Sorting:
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Pipeline for Ribosome Profiling Data☆19Jul 5, 2023Updated 2 years ago
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Aug 8, 2017Updated 8 years ago
- Reproducible GSEA Benchmarking☆14Oct 30, 2025Updated 4 months ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- ☆11Aug 6, 2019Updated 6 years ago
- ☆20Sep 8, 2023Updated 2 years ago
- Differential gene expression analysis on RNA-seq data☆13Apr 26, 2024Updated last year
- Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)☆13Mar 5, 2021Updated 5 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Jan 30, 2026Updated last month
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆14Sep 16, 2025Updated 6 months ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 9 years ago
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 2 years ago
- MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets☆34May 20, 2022Updated 3 years ago
- Analysis of RNA seq data to explore gene expression in different types of cancer☆11Oct 5, 2018Updated 7 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆29May 19, 2017Updated 8 years ago
- AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data☆14Aug 6, 2022Updated 3 years ago
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- ☆29Mar 16, 2023Updated 3 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 4 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21Oct 30, 2025Updated 4 months ago
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated last year
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆13May 4, 2022Updated 3 years ago
- Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.☆15Mar 3, 2025Updated last year
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Oct 17, 2019Updated 6 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- RNA-seq data analysis practical☆62Sep 9, 2014Updated 11 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Jul 19, 2025Updated 8 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Nov 17, 2024Updated last year
- Genome-wide assessment of differential translations with ribosome profiling data☆21May 6, 2025Updated 10 months ago
- Detection of differential translated genes using Ribo-seq☆16Apr 10, 2021Updated 4 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21May 23, 2025Updated 9 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 11 months ago