XPRESSyourself / XPRESSpipe
An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
☆13Updated 8 months ago
Alternatives and similar repositories for XPRESSpipe:
Users that are interested in XPRESSpipe are comparing it to the libraries listed below
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year
- ☆15Updated 2 years ago
- ☆12Updated 9 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 7 months ago
- HOT regions paper☆11Updated 5 years ago
- iread☆24Updated 3 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Workflow for Sequenza, cellularity and ploidy☆19Updated last week
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 2 weeks ago
- End-guided RNA assembler☆15Updated 4 months ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- Comprehensive and scalable differential splicing analyses☆15Updated last week
- ☆28Updated 3 months ago
- ☆18Updated 8 months ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- An R package to process and analyze transcriptomic data☆16Updated 6 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- simplified cellranger for long-read data☆18Updated 6 months ago
- interactive plots for differential expression analysis☆32Updated last month
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last month
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆11Updated last month
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- Isoform-level functional RNA-Seq analysis 🧬☆22Updated 3 months ago