Alternatives and similar repositories for ccgraph

Users that are interested in ccgraph are comparing it to the libraries listed below

• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 3 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• reedliu / scRNA-codes
  ☆17Updated 5 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• dengchunyu / TIP
  The source code of web server TIP, including example data.
  ☆19Updated 6 years ago
• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆29Updated 2 years ago
• bei-lab / scRNA-of-NPC
  Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution
  ☆12Updated 2 years ago
• Xiang-HF-Zhang / Dichotomous-of-innate-immune-landscape
  Dichotomous of innate immune landscape
  ☆17Updated 5 years ago
• zhiyhu / scFT-paper
  Z Hu et al. The repertoire of serous ovarian cancer non-genetic heterogeneity revealed by single-cell sequencing of normal fallopian tube…
  ☆13Updated 4 years ago
• jokergoo / ComplexHeatmap_v2_paper_code
  ☆20Updated 2 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆29Updated 6 years ago
• jmzeng1314 / IDmap
  ☆11Updated 6 years ago
• bioinformatist / CrossICC
  An Interactive Consensus Clustering framework for Cross-platform data analysis
  ☆14Updated 3 years ago
• Gibbsdavidl / Immune-Subtype-Clustering
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆18Updated 5 years ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆33Updated this week
• Changwuuu / Cuproptosis-pancancer
  ☆18Updated last year
• federicogiorgi / corto
  corto (Correlation Tool): an R package to generate correlation-based DPI networks
  ☆20Updated 2 years ago
• liuhong-jia / scAnno
  ☆24Updated 2 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 2 years ago
• dosorio / SCORPION
  Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…
  ☆9Updated last year
• DongqiangZeng0808 / Blasso
  Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers
  ☆20Updated 2 years ago
• jokergoo / BioCartaImage
  BioCarta pathway images
  ☆11Updated last year
• Aufiero / circRNAprofiler
  ☆10Updated 3 weeks ago
• ShixiangWang / Variants2Neoantigen
  A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
  ☆29Updated 5 years ago
• paulgeeleher / pRRophetic
  R package
  ☆22Updated last year
• compgenomics / MeTDiff
  ☆14Updated 6 years ago
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆15Updated 10 months ago
• Tuteja-Lab / TissueEnrich
  R package for tissue-specific gene enrichment
  ☆14Updated 3 years ago
• jmzeng1314 / BPscRNAseq
  ☆11Updated 6 years ago