immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
☆76Jun 22, 2026Updated last week
Alternatives and similar repositories for immuneML
Users that are interested in immuneML are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jun 24, 2021Updated 5 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 9 months ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆56Apr 3, 2024Updated 2 years ago
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 9 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆23May 21, 2024Updated 2 years ago
- A framework and specification language for simulating data based on graphical models☆19May 2, 2025Updated last year
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Oct 15, 2025Updated 8 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆242Feb 12, 2026Updated 4 months ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated 2 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- flexible CDR based distance metrics☆73Dec 16, 2025Updated 6 months ago
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Predicting TCR antigen recognition using statistical potentials☆26Jun 22, 2026Updated last week
- Matching T-cell receptor repertoires to a database of antigen specificities☆39Jun 26, 2026Updated last week
- AIRR Community Data Standards☆41Jun 8, 2026Updated 3 weeks ago
- ☆41Aug 18, 2020Updated 5 years ago
- Clonotype Neighbor Graph Analysis☆98Jun 15, 2026Updated 2 weeks ago
- ☆38Nov 27, 2023Updated 2 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆91Jun 14, 2022Updated 4 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆262Updated this week
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆67Nov 18, 2025Updated 7 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆30Jan 29, 2025Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- ☆12Sep 20, 2019Updated 6 years ago
- IgSimulator is a versatile tool for simulation of immunoglobulin repertoire☆12Nov 25, 2016Updated 9 years ago
- MHC Class I and Class II neoantigen binding prediction☆37Jul 23, 2025Updated 11 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Aug 2, 2022Updated 3 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆14May 16, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning☆127Sep 12, 2023Updated 2 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- ☆31Jun 24, 2025Updated last year
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 3 years ago