Alternatives and similar repositories for TrendCatcher

Users that are interested in TrendCatcher are comparing it to the libraries listed below

• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆18Updated last year
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆39Updated 8 months ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆35Updated 6 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆45Updated last month
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆57Updated last year
• wwylab / DeMixT
  ☆36Updated 2 months ago
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆46Updated last month
• dbdimitrov / BingleSeq
  BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
  ☆22Updated 4 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆30Updated 7 years ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆33Updated 4 years ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 6 years ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• almeidasilvaf / BioNERO
  Easy and comprehensive biological network reconstruction and analysis
  ☆34Updated 2 months ago
• Xiang-HF-Zhang / Dichotomous-of-innate-immune-landscape
  Dichotomous of innate immune landscape
  ☆17Updated 6 years ago
• paulgeeleher / pRRophetic
  R package
  ☆21Updated last year
• dengchunyu / TIP
  The source code of web server TIP, including example data.
  ☆20Updated 6 years ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆36Updated 2 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆48Updated last year
• jcolinge / BulkSignalR
  BulkSignalR
  ☆24Updated 4 months ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆37Updated 3 weeks ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆28Updated 3 months ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• HelenaLC / muscat-comparison
  ☆12Updated last year
• OSCA-source / OSCA.advanced
  Advanced steps of the OSCA book
  ☆14Updated 3 weeks ago
• zdq0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆29Updated 2 years ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 5 years ago
• satijalab / azimuth-references
  ☆26Updated 6 months ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆46Updated 2 years ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆41Updated 3 years ago