Alternatives and similar repositories for CAMLU:

Users that are interested in CAMLU are comparing it to the libraries listed below

• OSU-BMBL / scread-protocol
  ☆16Updated 2 years ago
• mardzix / bcd_nano_CUTnTag
  ☆11Updated last year
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• gabrielakinker / CCLE_heterogeneity
  ☆54Updated last year
• showteeth / scfetch
  Access and Format Single-cell RNA-seq Datasets from Public Resources
  ☆35Updated 2 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆23Updated 2 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆30Updated last year
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆43Updated 6 months ago
• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆10Updated 3 months ago
• wenweixiong / MARVEL
  ☆45Updated 6 months ago
• CostaLab / scrna_seurat_pipeline
  comprehensive analysis of single-cell transcriptomics data
  ☆20Updated 4 months ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆38Updated 5 months ago
• chanwkimlab / MarcoPolo
  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…
  ☆20Updated 3 months ago
• alexQiSong / scSTEM
  Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…
  ☆18Updated 2 years ago
• cboix / admultiregion_analysis
  Code repository for single-cell atlas of Alzheimer's disease progression across brain regions
  ☆30Updated 9 months ago
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆19Updated 4 years ago
• yunguan-wang / Spacia
  ☆27Updated 3 months ago
• sdentro / copykat_pipeline
  ☆11Updated last year
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated 4 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆36Updated last year
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆15Updated 3 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆26Updated 4 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• ZJUFanLab / scCATCH_performance_comparison
  The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and…
  ☆15Updated 2 years ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆19Updated 2 years ago
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆33Updated this week
• swaruplabUCI / ArchRtoSignac
  An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
  ☆34Updated 6 months ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 3 months ago