ati-lz / ISCHIALinks
Framework for analysis of cell-types and Ligand-Receptor cooccurrences
☆17Updated 2 years ago
Alternatives and similar repositories for ISCHIA
Users that are interested in ISCHIA are comparing it to the libraries listed below
Sorting:
- ☆30Updated 7 months ago
- ☆23Updated 2 years ago
- ☆53Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆27Updated last year
- ☆31Updated 9 months ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆35Updated 7 months ago
- ☆17Updated 2 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated 11 months ago
- ☆62Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆44Updated 4 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 10 months ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆21Updated 2 months ago
- ☆13Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- Spatial Cellular Estimator for Tumors☆60Updated last week
- ☆34Updated last month
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆54Updated 3 weeks ago
- ☆50Updated 4 months ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated last year
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆15Updated 10 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆19Updated 3 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Updated 2 years ago