Calling deletions using deep convolutional neural
☆24Feb 12, 2020Updated 6 years ago
Alternatives and similar repositories for DeepSV
Users that are interested in DeepSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Nov 22, 2022Updated 3 years ago
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆14Nov 28, 2019Updated 6 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Feb 3, 2021Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 8 years ago
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 7 months ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- ☆55Jun 24, 2020Updated 5 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- ☆51Jun 25, 2024Updated last year
- ☆25Apr 29, 2018Updated 7 years ago
- ☆13May 2, 2018Updated 7 years ago
- ☆35Mar 2, 2021Updated 5 years ago
- Toolkit for calling structural variants using short or long reads☆115Mar 7, 2026Updated 2 weeks ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 2 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34May 5, 2022Updated 3 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Aug 6, 2025Updated 7 months ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58May 29, 2020Updated 5 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆37Jun 19, 2020Updated 5 years ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28Aug 21, 2025Updated 7 months ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- Structural variant toolkit for VCFs☆401Updated this week
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Jan 8, 2018Updated 8 years ago
- Long read based human genomic structural variation detection with cuteSV☆281Sep 30, 2025Updated 5 months ago
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- A tool to detect structural variant☆17Mar 27, 2023Updated 2 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- Toolset for SV simulation, comparison and filtering☆413Dec 1, 2023Updated 2 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 7 months ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Nov 18, 2020Updated 5 years ago
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago