Alternatives and similar repositories for kgp

Users that are interested in kgp are comparing it to the libraries listed below

• QuantGen / BGData
  A Suite of Packages for Analysis of Big Genomic Data
  ☆34Updated 8 months ago
• jokergoo / simona
  Semantic Similarity in Bio-Ontologies
  ☆17Updated last month
• gosling-lang / grosling
  R interface to 'Gos'
  ☆39Updated 2 years ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆30Updated 5 months ago
• csoneson / treeclimbR
  ☆20Updated 2 months ago
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆21Updated 3 weeks ago
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 5 years ago
• zhengxwen / SeqArray
  Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)
  ☆46Updated this week
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆39Updated 2 years ago
• gabrielodom / pathwayPCA
  integrative pathway analysis with modern PCA methodology and gene selection
  ☆11Updated 2 years ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆31Updated last week
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆23Updated 10 months ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 10 months ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• clindet / anor
  anor: an annotation and visualization system based on R and Shiny framework
  ☆33Updated 5 years ago
• Bioconductor / bioc-run
  Helper script for bioconductor/bioconductor_docker
  ☆13Updated 6 months ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆43Updated 2 months ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated 2 months ago
• LieberInstitute / megadepth
  R interface to megadepth: BigWig and BAM related utilities
  ☆12Updated 9 months ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 8 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆41Updated last year
• seandavi / BiocPkgTools
  Computable build reports, package metadata, and download stats from the Bioconductor project
  ☆21Updated last month
• BgeeDB / BgeeDB_R
  Source code of the R packge BgeeDB to use data from the Bgee database
  ☆16Updated this week
• Bioconductor / S4Vectors
  Foundation of vector-like and list-like containers in Bioconductor
  ☆18Updated 2 weeks ago
• AlexandrovLab / SigProfilerMatrixGeneratorR
  R wrapper for utilizing the SigProfilerMatrixGenerator framework
  ☆20Updated 2 years ago
• aedin / PCAworkshop
  An introduction to matrix factorization and PCA and SVD.
  ☆41Updated 2 years ago
• davemcg / awesome_genome_browsers
  ☆10Updated 6 years ago