ACEnglish / usable_vcfLinks
Run multiple programs to check if a VCF is usable
☆11Updated 5 years ago
Alternatives and similar repositories for usable_vcf
Users that are interested in usable_vcf are comparing it to the libraries listed below
Sorting:
- ☆12Updated 3 years ago
- ☆16Updated 4 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- ☆13Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆14Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 7 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- ☆21Updated 3 months ago
- Sample Contamination Estimate from VCF☆19Updated 7 months ago
- ☆16Updated 3 years ago
- A python wrapper around SURVIVOR☆20Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- ☆10Updated 3 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆10Updated 6 months ago
- Functions to compare a SV call sets against a truth set.☆29Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- General purpose utility related to GAF files☆28Updated this week