Run multiple programs to check if a VCF is usable
☆11May 15, 2020Updated 6 years ago
Alternatives and similar repositories for usable_vcf
Users that are interested in usable_vcf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Apr 18, 2022Updated 4 years ago
- ☆16Oct 3, 2017Updated 9 years ago
- Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery☆13Sep 10, 2026Updated last month
- A method to locate variation clusters☆11Nov 27, 2025Updated 11 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14Sep 20, 2026Updated last month
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28May 19, 2026Updated 5 months ago
- For more details about Mobster please see☆10Dec 7, 2022Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 8 months ago
- ☆13Oct 13, 2021Updated 5 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆17Jul 21, 2026Updated 3 months ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool for summarizing, extracting, generating and modifying DNA sequences.☆24Dec 17, 2024Updated last year
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Pathogenicity prediction and prioritization of genetic variants.☆20Sep 21, 2026Updated last month
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- Computational pipelines for processing of paired-end Illumina reads☆11Dec 11, 2023Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆42May 19, 2026Updated 5 months ago
- ☆18Jul 13, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Toolkit for calling structural variants using short or long reads☆120Aug 21, 2026Updated 2 months ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 8 years ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆23Jul 23, 2026Updated 3 months ago
- Collection of notes and scripts related to NGS☆14Sep 2, 2026Updated last month
- De novo tandem repeat calling from PacBio HiFi data☆19Oct 1, 2026Updated 3 weeks ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Long-read metagenomic analysis☆112Oct 10, 2023Updated 3 years ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆20Oct 20, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- DMRs detection, annotation and analysis☆10Jan 19, 2026Updated 9 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆31Sep 21, 2024Updated 2 years ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆42Mar 13, 2025Updated last year
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago