vsbuffalo / duckdb-vcf-extension
☆11Updated 4 months ago
Alternatives and similar repositories for duckdb-vcf-extension
Users that are interested in duckdb-vcf-extension are comparing it to the libraries listed below
Sorting:
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- reference free variant assembly☆33Updated last year
- Catalogue of pairwise alignment algorithms and benchmarks☆26Updated 9 months ago
- For bluntifying overlapped GFAs☆13Updated 9 months ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated 9 months ago
- multi-tool QC for minion data☆9Updated 6 years ago
- PHYLIP package starting with version 4.0a☆19Updated last week
- kProcessor: kmers processing framework.☆11Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated 2 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆16Updated last week
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- drunk on perbase pileups and lua expressions☆18Updated last week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Python bindings to minimap2☆16Updated 7 years ago
- Statistical inference of recent positive selection using IBD segments☆13Updated 2 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated last week
- Minimizer-based assembly scaffolding and mapping using long reads☆39Updated 7 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated 3 months ago
- Workflows I find helpful for fungal genome annotation☆21Updated last year
- Run shell commands in a scientifically reproducible and robust way☆17Updated 2 months ago
- ☆17Updated 3 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆27Updated last year
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated 10 months ago
- Variant call adjudication☆16Updated 11 months ago
- Reference genome quality scores☆20Updated 4 years ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- map Illumina metagenomes to genomes!☆38Updated last week
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated last year