ndierckx / Sim-itLinks
Versatile simulator for structural variance and Nanopore/PacBio sequencing reads
☆27Updated this week
Alternatives and similar repositories for Sim-it
Users that are interested in Sim-it are comparing it to the libraries listed below
Sorting:
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- ☆37Updated last year
- ☆48Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Variant annotation and merging pipeline☆39Updated 2 weeks ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆31Updated 11 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆17Updated this week
- ☆36Updated 2 years ago
- TGS scaffolding☆46Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- SV calling for diploid assemblies☆28Updated last year
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆41Updated last year
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- ☆31Updated 5 years ago
- ☆77Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 3 weeks ago
- ☆34Updated 5 years ago
- Phased structural variant discovery in pangenomes☆34Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Linear-time de novo Long Read Assembler☆42Updated 6 months ago