ndierckx / Sim-it
Versatile simulator for structural variance and Nanopore/PacBio sequencing reads
☆25Updated last year
Alternatives and similar repositories for Sim-it:
Users that are interested in Sim-it are comparing it to the libraries listed below
- Variant annotation and merging pipeline☆32Updated 2 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- ☆35Updated last year
- SV genotyping with long reads☆40Updated last year
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆34Updated 2 years ago
- ☆48Updated 9 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 2 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- HiFi-based caller for highly similar paralogous genes☆38Updated last week
- TGS scaffolding☆46Updated 3 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆43Updated 2 years ago
- ☆76Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 3 weeks ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- ☆32Updated 2 weeks ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆47Updated last year
- ☆35Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆34Updated 4 months ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆42Updated this week
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆14Updated 9 months ago
- ☆30Updated 5 years ago