YuzheWangPKU / DiffPepBuilderLinks
Official repository for DiffPepBuilder and DiffPepDock tools
☆93Updated 3 weeks ago
Alternatives and similar repositories for DiffPepBuilder
Users that are interested in DiffPepBuilder are comparing it to the libraries listed below
Sorting:
- ☆100Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆110Updated 3 weeks ago
- ☆170Updated last week
- ☆70Updated 5 months ago
- Official repository of EnzymeFlow☆91Updated 7 months ago
- ☆81Updated last month
- ☆43Updated 10 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆59Updated last month
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆60Updated 2 weeks ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆79Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 7 months ago
- ☆50Updated 3 weeks ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆131Updated last week
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆73Updated 2 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆83Updated last month
- Public Release of ProGen3 family of Models☆75Updated 2 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)☆95Updated 3 months ago
- ☆108Updated 2 years ago
- A bunch of shell utilities for dealing the silent files☆62Updated 2 months ago
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆79Updated last week
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- ☆53Updated last month
- Official repository of GENzyme☆53Updated 7 months ago
- ☆91Updated 9 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated 11 months ago
- Code for humanization of antibody and nanobody☆44Updated 7 months ago
- ☆40Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆78Updated last year
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆85Updated last year