Alternatives and similar repositories for DiffPepBuilder

Users that are interested in DiffPepBuilder are comparing it to the libraries listed below

• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆120Updated 3 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆71Updated last month
• baker-laboratory / CA_RFDiffusion
  ☆72Updated 4 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆94Updated 10 months ago
• yehlincho / BoltzDesign1
  ☆209Updated last month
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• ELELAB / RosettaDDGPrediction
  ☆76Updated 7 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆85Updated 3 months ago
• ai4protein / VenusREM
  🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
  ☆106Updated last month
• bytedance / PXDesignBench
  A Unified Evaluation Suite for Protein Design
  ☆83Updated last month
• Kuhlman-Lab / evopro
  ☆87Updated 2 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆45Updated 10 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆53Updated 10 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆55Updated 7 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆146Updated 3 weeks ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆56Updated last month
• levinthal / Pallatom
  ☆117Updated 4 months ago
• bunzela / AIzymes
  ☆57Updated 2 months ago
• jproney / AF2Rank
  ☆112Updated 2 years ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• zhanghaicang / carbonmatrix_public
  ☆116Updated 3 months ago
• MattMcPartlon / AttnPacker
  Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"
  ☆89Updated last year
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆66Updated 3 months ago
• bene837 / af2seq
  ☆44Updated last year
• wengong-jin / DSMBind
  ☆93Updated 11 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆68Updated this week
• sokrypton / af2bind
  ☆50Updated 2 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆101Updated 2 weeks ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 2 months ago
• Alex-Abrudan / DynamicMPNN
  ☆36Updated 2 months ago