YuzheWangPKU / DiffPepBuilderView external linksLinks
Official repository for DiffPepBuilder and DiffPepDock tools
☆116Oct 24, 2025Updated 3 months ago
Alternatives and similar repositories for DiffPepBuilder
Users that are interested in DiffPepBuilder are comparing it to the libraries listed below
Sorting:
- In silico directed evolution of peptide binders with AlphaFold☆261Jan 5, 2026Updated last month
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆104May 25, 2025Updated 8 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆114Oct 30, 2025Updated 3 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆224Aug 7, 2025Updated 6 months ago
- Protein representation and design under a single training scheme☆24Dec 17, 2025Updated last month
- Diffusion-based all-atom protein generative model.☆230Aug 27, 2025Updated 5 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆133Nov 11, 2025Updated 3 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- User friendly and accurate binder design pipeline☆1,007Feb 5, 2026Updated last week
- ☆94Oct 14, 2025Updated 4 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆49Dec 2, 2025Updated 2 months ago
- Structure prediction and design of proteins with noncanonical amino acids☆118Feb 1, 2026Updated last week
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year
- ☆61Jan 23, 2026Updated 3 weeks ago
- ☆13Dec 5, 2024Updated last year
- Design data and process for the AdaptyvBio protein design competition☆10Dec 11, 2024Updated last year
- Making Protein Design accessible to all via Google Colab!☆883Dec 8, 2025Updated 2 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120May 27, 2025Updated 8 months ago
- ☆118Jan 3, 2026Updated last month
- Template-based protein design with Raygun☆77Updated this week
- Code for humanization of antibody and nanobody☆74Aug 28, 2025Updated 5 months ago
- ☆37Aug 28, 2023Updated 2 years ago
- ☆15May 29, 2024Updated last year
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆322Oct 6, 2025Updated 4 months ago
- ☆386Aug 7, 2024Updated last year
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Feb 3, 2026Updated last week
- ☆32Feb 5, 2025Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆312Jul 19, 2024Updated last year
- Public RFDiffusionAA repo☆463Jul 9, 2024Updated last year
- ☆21Oct 26, 2024Updated last year
- ☆31Aug 16, 2025Updated 5 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆107Apr 16, 2025Updated 9 months ago
- EvolveX, a de novo antibody computational design pipeline.☆22Sep 18, 2025Updated 4 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆61May 21, 2025Updated 8 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Jun 11, 2025Updated 8 months ago
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Jul 29, 2024Updated last year
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Aug 21, 2025Updated 5 months ago
- ☆61Apr 9, 2024Updated last year