Alternatives and similar repositories for Protein_Redesign

Users that are interested in Protein_Redesign are comparing it to the libraries listed below

• lamm-mit / ProteinMechanicsDiffusionDesign
  ☆27Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆91Updated 7 months ago
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆53Updated 6 months ago
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆22Updated 2 weeks ago
• KULL-Centre / _2024_cagiada_stability
  ☆74Updated 10 months ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆80Updated 11 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆37Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• AI4PDLab / ProtRL
  ☆102Updated last week
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆52Updated last month
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆69Updated 8 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆60Updated this week
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆73Updated 10 months ago
• ChenPy00 / PPB-Affinity
  Baseline model for PPB-Affinity benchmark data
  ☆34Updated 8 months ago
• smiles724 / PeptideDesign
  ☆35Updated 2 months ago
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆40Updated last year
• HySonLab / LatentDE
  LatentDE: Latent-based Directed Evolution for Protein Sequence Design
  ☆37Updated 10 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆34Updated 3 months ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• HannesStark / CodonMPNN
  ☆30Updated last year
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆53Updated last week
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆36Updated 2 years ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆33Updated 2 years ago
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆58Updated 2 years ago
• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆42Updated 2 years ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆56Updated last month
• brennanaba / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆34Updated 3 years ago