HySonLab / Protein_RedesignLinks
ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models
☆39Updated last year
Alternatives and similar repositories for Protein_Redesign
Users that are interested in Protein_Redesign are comparing it to the libraries listed below
Sorting:
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆72Updated 9 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 7 months ago
- ☆27Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆90Updated 6 months ago
- Generative diverse protein backbones by protein language model☆34Updated 2 months ago
- Structure prediction of alternative protein conformations☆80Updated 10 months ago
- ☆72Updated 9 months ago
- Code for the paper "Learning to engineer protein flexibility".☆22Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- dMaSIF implementation for google colab☆36Updated 2 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆46Updated last month
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆51Updated 5 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆35Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 7 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆83Updated last year
- A benchmark for 3D biomolecular structure prediction models☆67Updated 7 months ago
- Baseline model for PPB-Affinity benchmark data☆34Updated 7 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆53Updated 2 weeks ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Updated 2 years ago
- ☆46Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆58Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆50Updated 3 weeks ago
- Modelling protein conformational landscape with Alphafold☆54Updated 4 months ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Updated 3 years ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 8 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- A pipeline that used ML model based on Rosetta descriptors to predict the binding affinity of protein-protein complexes☆48Updated 2 months ago