HySonLab / Protein_Redesign

Related projects ⓘ

Alternatives and complementary repositories for Protein_Redesign

• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆42Updated 3 weeks ago
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆52Updated 9 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆33Updated 2 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆20Updated last month
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆84Updated 3 months ago
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆52Updated this week
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆34Updated 4 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆51Updated last year
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆29Updated last year
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆26Updated 2 weeks ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆70Updated 4 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆36Updated 5 months ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆32Updated last week
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆44Updated 3 weeks ago
• HannesStark / CodonMPNN
  ☆23Updated last month
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆71Updated 2 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆60Updated 9 months ago
• sokrypton / af2bind
  ☆42Updated 4 months ago
• rish-16 / rna-backbone-design
  Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design
  ☆31Updated last week
• WeilabMSU / TopoFormer
  Topological transformer for protein-ligand complex interaction prediction.
  ☆29Updated 4 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for Target-Specific De Novo Peptide Binder Design with DiffPepBuilder
  ☆60Updated this week
• clami66 / dgram2dmap
  Converts AlphaFold distograms into distance matrices and saves them into a number of formats
  ☆11Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆71Updated last month
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆24Updated this week
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆37Updated 6 months ago
• bene837 / af2seq
  ☆38Updated 2 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆42Updated 3 months ago
• skalyaanamoorthy / PSLMs
  ☆10Updated 3 weeks ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆65Updated 8 months ago