OSCA-source / OSCA.basicView external linksLinks
Basics of the OSCA book
☆14Sep 29, 2025Updated 4 months ago
Alternatives and similar repositories for OSCA.basic
Users that are interested in OSCA.basic are comparing it to the libraries listed below
Sorting:
- A benchmark on predicting how small molecules change gene expression in different cell types.☆13Jul 4, 2025Updated 7 months ago
- Official repository of the data-driven deconvolution approach Sweetwater.☆15Sep 9, 2025Updated 5 months ago
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- Viernes de Bioinformatica en el LIIGH, 2 febrero - 2 de agosto 2024☆27Oct 24, 2025Updated 3 months ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 2 months ago
- ☆11Jun 15, 2021Updated 4 years ago
- GitKraken lesson (forked from HBS-RCS)☆10Jul 15, 2021Updated 4 years ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- EXpression PREdiction with Summary Statistics Only☆13Dec 10, 2025Updated 2 months ago
- Curve fitting algorithms for bio-assays with a scikit-learn api☆28Nov 25, 2025Updated 2 months ago
- ☆10Apr 6, 2022Updated 3 years ago
- FIDE Data Pull☆14Jan 29, 2022Updated 4 years ago
- ☆13Oct 7, 2024Updated last year
- LORIS: A LOgistic Regression-based Immunotherapy-response Score☆14Nov 18, 2024Updated last year
- BSMN common data processing pipeline☆11Jun 6, 2025Updated 8 months ago
- ☆15May 22, 2025Updated 8 months ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆12Jul 19, 2021Updated 4 years ago
- Lifeweb AI team Language Models☆16Mar 11, 2024Updated last year
- Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers☆10Oct 18, 2024Updated last year
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆13May 27, 2025Updated 8 months ago
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆18Dec 3, 2025Updated 2 months ago
- ☆18Feb 18, 2021Updated 4 years ago
- A tool for analyzing and visualizing discrete temporal events☆17Aug 15, 2018Updated 7 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Feb 25, 2022Updated 3 years ago
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution☆13Mar 1, 2023Updated 2 years ago
- ☆14Apr 4, 2023Updated 2 years ago
- Repository for the online book "Guide to Effect Sizes and Confidence Intervals"☆17Jan 16, 2024Updated 2 years ago
- ☆18Updated this week
- Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.☆13Aug 7, 2025Updated 6 months ago
- ☆13Sep 1, 2020Updated 5 years ago
- bioinfo workflow based on snakemake☆14Feb 22, 2024Updated last year
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆17Jan 15, 2026Updated 3 weeks ago
- Boiler template for a Python hug API application with SQLAlchemy, alembic and pytest☆12Aug 12, 2019Updated 6 years ago
- The book aims to describe programming good practices and introduce common tools used in software development to guarantee reproducibility…☆15Jan 2, 2023Updated 3 years ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Jun 21, 2022Updated 3 years ago
- Published methods☆15Oct 19, 2016Updated 9 years ago
- "Integrating Topics and Syntax" T.L. Griffiths et al. Python implementation of HMM-LDA☆16Sep 24, 2015Updated 10 years ago
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆15Apr 27, 2020Updated 5 years ago
- pyRforest: A comprehensive R package for genomic data analysis featuring scikit-learn Random Forests in R☆14Aug 20, 2024Updated last year