Alternatives and similar repositories for oocPCA

Users that are interested in oocPCA are comparing it to the libraries listed below

• timothy-barry / ondisc
  Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.
  ☆11Updated last year
• stephenslab / flashr
  R package for Empirical Bayes Factor Analysis.
  ☆51Updated last year
• StoreyLab / lfa
  logistic factor analysis
  ☆16Updated 7 months ago
• kharchenkolab / vrnmf
  Volume-regularized NMF
  ☆17Updated 3 years ago
• const-ae / sparseMatrixStats
  Implementation of the matrixStats API for sparse matrices
  ☆54Updated 8 months ago
• maiermarco / DirichletReg
  ☆13Updated 4 years ago
• HenrikBengtsson / git-bioc
  LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync
  ☆10Updated 9 years ago
• Bioconductor / DelayedArray
  A unified framework for working transparently with on-disk and in-memory array-like datasets
  ☆27Updated last month
• PeteHaitch / DelayedMatrixStats
  A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package
  ☆15Updated 7 months ago
• linxihui / NNLM
  Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
  ☆82Updated last year
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆84Updated last month
• LTLA / TileDBArray
  Clone of the Bioconductor repository for the TileDBArray package.
  ☆11Updated 5 months ago
• NicolasH2 / ggdendroplot
  dendrograms in ggplot2.
  ☆10Updated 4 years ago
• anders-biostat / sleepwalk
  Exploring dimension-reduced embeddings
  ☆111Updated 3 years ago
• jchiquet / aricode
  R package for computation of (adjusted) rand-index and other such scores
  ☆27Updated 2 weeks ago
• PhilBoileau / scPCA
  A toolbox for sparse contrastive principal component analysis
  ☆12Updated 9 months ago
• Bioconductor / S4Vectors
  Foundation of vector-like and list-like containers in Bioconductor
  ☆17Updated last month
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated 2 years ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• mtmorgan / TENxGenomics
  Interface to 10x Genomics' 1.3 m single cell data set
  ☆18Updated 7 years ago
• drisso / zinbwave
  Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
  ☆45Updated last year
• Bioconductor / BiocStyle
  Issues and pull requests for BiocStyle should go here.
  ☆14Updated last month
• WandeRum / multiROC
  Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications
  ☆34Updated 4 years ago
• TomKellyGenetics / leiden
  Implementation of the Leiden algorithm called by reticulate in R. (CRAN)
  ☆42Updated last year
• willtownes / glmpca
  ☆95Updated last year
• MSKCC-Epi-Bio / gnomeR
  Package to wrangle and visualize genomic data in R
  ☆26Updated last month
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• traversc / trqwe
  Performance oriented statistical metrics and utility functions in R
  ☆30Updated 5 years ago
• SaskiaFreytag / schex
  ☆74Updated last year
• cole-trapnell-lab / leidenbase
  ☆13Updated 8 months ago