A toolkit for processing multiplexed tissue images
☆68Aug 31, 2026Updated this week
Alternatives and similar repositories for steinbock
Users that are interested in steinbock are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for reading imaging mass cytometry (IMC) files☆20Updated this week
- R package for visualization of highly multiplexed imaging data☆36Aug 25, 2026Updated last week
- Tools to handle IMC data☆25Mar 31, 2022Updated 4 years ago
- Imaging Mass Cytometry (IMC) file type support for napari☆13Jul 8, 2026Updated last month
- CellProfiler plugins for multiplexed image analysis☆12Feb 16, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Integrated pipeline for multiplexed image analysis☆108Aug 20, 2026Updated 2 weeks ago
- IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications☆55Aug 14, 2024Updated 2 years ago
- A pixel classification based multiplexed image segmentation pipeline☆107Dec 5, 2023Updated 2 years ago
- An open and interoperable data framework for spatial omics data☆388Updated this week
- An R package for handling and analysing imaging mass cytometry data☆32May 19, 2026Updated 3 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆28Jan 14, 2020Updated 6 years ago
- R based workflow for multiplexed imaging data☆40Mar 20, 2026Updated 5 months ago
- ☆12Updated this week
- Histology Topography Cytometry Analysis Toolbox☆69Mar 23, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multiple-choice microscopy pipeline☆156Aug 3, 2026Updated last month
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated this week
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆21Dec 27, 2023Updated 2 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Sep 23, 2025Updated 11 months ago
- ☆19Apr 5, 2024Updated 2 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Segmentation error aware clustering for multiplexed imaging☆19Jan 9, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Updated this week
- ☆38Dec 13, 2023Updated 2 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 2 months ago
- Central repository for the Multiplexed Tissue Imaging Workshop 2023.☆10Jan 9, 2023Updated 3 years ago
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆127Updated this week
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆70Sep 19, 2025Updated 11 months ago
- An R package for ECM molecule annotation, classification, and analysis☆14Sep 20, 2024Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 4 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Cytometry dATa anALYsis Tools☆75Apr 28, 2026Updated 4 months ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆16Oct 10, 2019Updated 6 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆81Aug 22, 2026Updated last week
- Spatial Single Cell Analysis in Python☆596Updated this week
- Deep Learning Library for Single Cell Analysis☆477Jun 4, 2026Updated 3 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Aug 28, 2026Updated last week