vanvalenlab / deepcell-tfLinks
Deep Learning Library for Single Cell Analysis
☆451Updated 9 months ago
Alternatives and similar repositories for deepcell-tf
Users that are interested in deepcell-tf are comparing it to the libraries listed below
Sorting:
- An introduction to deepcell and deep learning☆148Updated 7 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆173Updated this week
- Cloud-based data annotation tools for biological images☆81Updated last year
- CellProfiler tutorial pipelines and images☆93Updated 3 weeks ago
- ☆189Updated last year
- Open source Python library for building bioimage analysis pipelines☆170Updated last week
- ☆167Updated last month
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆215Updated 4 months ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆154Updated 9 months ago
- Spatial Single Cell Analysis in Python☆488Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- ☆81Updated 2 months ago
- Morphological profiling using deep learning☆117Updated 7 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 8 months ago
- Multiple-choice microscopy pipeline☆131Updated 3 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆115Updated 5 months ago
- Python package for processing image-based profiling data☆117Updated this week
- Segment Anything for Microscopy☆547Updated last week
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆213Updated last year
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆77Updated last month
- Codebase for "A Foundation Model for Cell Segmentation"☆94Updated 2 weeks ago
- Integrated pipeline for multiplexed image analysis☆90Updated 2 months ago
- Notebooks to illustrate how BigFISH is working.☆13Updated 2 years ago
- Read and write life sciences file formats☆140Updated 8 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆54Updated 4 years ago
- Community-contributed and experimental CellProfiler modules.☆65Updated 2 weeks ago
- Track cells and build cell lineages☆34Updated 10 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆142Updated 3 months ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆195Updated 4 years ago
- starfish: unified pipelines for image-based transcriptomics☆232Updated last week