Deep Learning Library for Single Cell Analysis
☆481Jun 4, 2026Updated 4 months ago
Alternatives and similar repositories for deepcell-tf
Users that are interested in deepcell-tf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cloud-based data annotation tools for biological images☆85Jun 4, 2026Updated 4 months ago
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,423Jun 14, 2026Updated 4 months ago
- An introduction to deepcell and deep learning☆155Oct 21, 2024Updated 2 years ago
- Multiple-choice microscopy pipeline☆156Oct 17, 2026Updated 2 weeks ago
- StarDist - Object Detection with Star-convex Shapes☆1,287Feb 14, 2026Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Integrated pipeline for multiplexed image analysis☆110Sep 18, 2026Updated last month
- Track cells and build cell lineages☆35Jun 4, 2026Updated 4 months ago
- Spatial Single Cell Analysis in Python☆613Updated this week
- Spatial Single-Cell Analysis Toolkit☆116Oct 26, 2026Updated last week
- A pixel classification based multiplexed image segmentation pipeline☆108Dec 5, 2023Updated 2 years ago
- Run DeepCell Applications☆10Apr 19, 2023Updated 3 years ago
- ☆37Oct 10, 2025Updated last year
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆656Updated this week
- A toolkit for processing multiplexed tissue images☆70Oct 19, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Aug 28, 2026Updated 2 months ago
- Bio-Formats image file format to raw format converter☆115Updated this week
- A package for the analysis of Imaging Mass Cytometry data☆17Mar 25, 2026Updated 7 months ago
- Segment Anything for Microscopy☆744Updated this week
- ☆19Apr 5, 2024Updated 2 years ago
- ☆73Jan 18, 2023Updated 3 years ago
- ☆216Jun 29, 2023Updated 3 years ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆31Apr 5, 2022Updated 4 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- DeepCell Kiosk Distribution for Kubernetes on GKE and AWS☆39Jul 12, 2023Updated 3 years ago
- An open-source application for biological image analysis☆1,143Updated this week
- Bayesian Segmentation of Spatial Transcriptomics Data☆219Oct 2, 2026Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Oct 26, 2026Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆59Sep 2, 2026Updated 2 months ago
- Microscopy Image Cytometry Toolkit☆118Jul 15, 2022Updated 4 years ago
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆372Oct 21, 2026Updated last week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,719Updated this week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An open and interoperable data framework for spatial omics data☆404Updated this week
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated last year
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆263Updated this week
- Spatial alignment of single cell transcriptomic data.☆376Jul 1, 2025Updated last year
- Bayesian multi-object tracking☆335Apr 1, 2026Updated 7 months ago
- InstanSeg is a pytorch-based cell and nucleus segmentation pipeline for fluorescence and brightfield microscopy images.☆251Sep 29, 2026Updated last month
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆207Sep 15, 2020Updated 6 years ago