Scripts for interacting with and generating data from the commercial MIBIScope
☆16Jan 22, 2026Updated 2 months ago
Alternatives and similar repositories for toffy
Users that are interested in toffy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrated pipeline for multiplexed image analysis☆105Jan 7, 2026Updated 3 months ago
- ☆18Apr 5, 2024Updated 2 years ago
- Python client for IONpath MIBItracker API, plus utility functions for working with MIBItiff images.☆14Oct 15, 2024Updated last year
- Probabilistic topic model for identifying cellular micro-environments.☆28Jul 6, 2023Updated 2 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The Browsable Atlas of Behavior-Anatomy Maps (BABAM) is a GUI for exploring hypotheses of correlations between neural activity in regions…☆13May 17, 2023Updated 2 years ago
- ggplot2 extension to visualize persistent homology☆25Mar 9, 2026Updated last month
- Fast Computation of Zigzag Persistence☆14Dec 9, 2023Updated 2 years ago
- Deep Clustering Learning☆12Aug 8, 2019Updated 6 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- Python functions to compute multiparameter persistence landscapes from a RIVET file☆14Jul 13, 2024Updated last year
- some papers about TDA☆13May 18, 2022Updated 3 years ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆15Dec 8, 2024Updated last year
- Workshops on Computational Biology organized by our lab☆10Mar 25, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Tool to encode/decode .ipynb into .py files.☆17Jan 27, 2026Updated 2 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆26Apr 6, 2026Updated last week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆65Mar 14, 2024Updated 2 years ago
- Differential spatial enrichment across conditions☆27Oct 1, 2025Updated 6 months ago
- A tutorial on learned non-adversarial invariance in neural networks☆14Dec 8, 2019Updated 6 years ago
- Histology Topography Cytometry Analysis Toolbox☆69Mar 23, 2026Updated 3 weeks ago
- Mixture-of-Experts Variational Autoencoder for Clustering and Generating from Similarity-Based Representations on Single Cell Data☆13Apr 22, 2021Updated 4 years ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated last year
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Jul 24, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated 10 months ago
- A Python library for easily calculating image-quality related features from images☆22Jul 6, 2023Updated 2 years ago
- [ICML 2025] Code for SUICA: Learning Super-high Dimensional Sparse Implicit Neural Representations for Spatial Transcriptomics.☆20Nov 22, 2025Updated 4 months ago
- ☆28Jul 30, 2024Updated last year
- A scheduler to manage a multi tool dual arm robot while avoiding arm-to-arm collisions; considering complex side constraints; and optimiz…☆11Jul 6, 2021Updated 4 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Oct 23, 2024Updated last year
- Image augmentation library in Python for machine learning.☆13Mar 9, 2020Updated 6 years ago
- Python implementation of 7 wonders base game☆20Jan 6, 2015Updated 11 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Jan 9, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆21Apr 1, 2024Updated 2 years ago
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆30Aug 11, 2025Updated 8 months ago
- postal.js add-on providing base 'federation' facilities for linking remote instances of postal together.☆25Mar 4, 2026Updated last month
- Simple 3D or 2D OpenGL viewer with mouse rotation, pan, zoom and some object selection.☆18Dec 13, 2018Updated 7 years ago
- ☆11Jul 30, 2023Updated 2 years ago
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- Central repository for the Multiplexed Tissue Imaging Workshop 2023.☆10Jan 9, 2023Updated 3 years ago