angelolab / toffyLinks
Scripts for interacting with and generating data from the commercial MIBIScope
☆15Updated last month
Alternatives and similar repositories for toffy
Users that are interested in toffy are comparing it to the libraries listed below
Sorting:
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆80Updated this week
- ☆39Updated last year
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆33Updated 4 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆92Updated 2 years ago
- ☆53Updated 4 years ago
- Test genes for Spatial Variation☆15Updated 11 months ago
- Integrated pipeline for multiplexed image analysis☆100Updated 8 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 9 months ago
- Bayesian Analytics for Spatial Segmentation☆30Updated 7 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Spatial Single-Cell Analysis Toolkit☆105Updated 5 months ago
- ☆70Updated 2 years ago
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- ☆13Updated last month
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 6 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆70Updated last month
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- A novel method for single-cell diagonal integration: scConfluence☆25Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆97Updated 9 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆48Updated this week
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Updated 8 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 5 months ago
- Differential spatial enrichment across conditions☆20Updated 2 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- ☆13Updated 2 years ago
- ☆83Updated last week
- ☆62Updated last week
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago