angelolab / toffyLinks
Scripts for interacting with and generating data from the commercial MIBIScope
☆15Updated last week
Alternatives and similar repositories for toffy
Users that are interested in toffy are comparing it to the libraries listed below
Sorting:
- ☆41Updated last week
- ☆53Updated 4 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- Test genes for Spatial Variation☆15Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆116Updated 3 weeks ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Updated 2 years ago
- Bayesian Analytics for Spatial Segmentation☆30Updated 9 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Updated 6 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 11 months ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆91Updated last year
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- ☆19Updated 2 weeks ago
- Differential spatial enrichment across conditions☆20Updated 4 months ago
- ☆88Updated this week
- ☆52Updated 3 months ago
- Spatial Single-Cell Analysis Toolkit☆108Updated 3 weeks ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆23Updated 9 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Updated this week
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 3 weeks ago
- Integrated pipeline for multiplexed image analysis☆102Updated 3 weeks ago
- ☆44Updated 3 months ago
- data for spacejam2☆18Updated 3 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 7 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆69Updated 2 years ago
- ☆65Updated this week
- ☆71Updated 3 years ago
- Single-cell spatial proteomics analysis that makes you happy!☆51Updated this week