Image Mass Cytometry analysis pipeline
☆26Jun 3, 2025Updated last year
Alternatives and similar repositories for imcyto
Users that are interested in imcyto are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools to handle IMC data☆25Mar 31, 2022Updated 4 years ago
- A pixel classification based multiplexed image segmentation pipeline☆106Dec 5, 2023Updated 2 years ago
- R package for visualization of highly multiplexed imaging data☆36Updated this week
- CODEX data processing code☆12Jul 1, 2025Updated 11 months ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆75May 7, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Multiple-choice microscopy pipeline☆153May 21, 2026Updated 3 weeks ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- Secure Cloud Object REsource: file transfer microservice☆20May 25, 2026Updated 2 weeks ago
- Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.☆34Jan 10, 2023Updated 3 years ago
- An R package for the analysis and interpretation of cell migration tracks.☆14Sep 19, 2025Updated 8 months ago
- Color Deconvolution for quantification of histological staining☆12Dec 18, 2018Updated 7 years ago
- ☆14Jan 16, 2019Updated 7 years ago
- Robust quad-tree based registration on whole slide images☆20Apr 2, 2025Updated last year
- Interactive applications of stlearn☆16May 1, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆20Updated this week
- ☆16Jun 2, 2021Updated 5 years ago
- An introduction to OME-Zarr for big bioimaging data☆27Jun 2, 2026Updated last week
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 2 months ago
- Scripts for interacting with and generating data from the commercial MIBIScope☆17Jan 22, 2026Updated 4 months ago
- Data visualization tools for brain tumour datasets☆15Sep 13, 2021Updated 4 years ago
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21May 19, 2025Updated last year
- Histopathology whole slide image library☆16May 22, 2026Updated 3 weeks ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆44May 27, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single Cell Analysis Operations☆15Nov 25, 2025Updated 6 months ago
- ☆23Mar 22, 2023Updated 3 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- Microscopy Image Cytometry Toolkit☆116Jul 15, 2022Updated 3 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 6 months ago
- Ordering gene-expression and functional events in single-cell experiments☆32May 31, 2026Updated 2 weeks ago
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- ☆19Nov 7, 2023Updated 2 years ago
- public production version of sequin to share with the public☆11Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- elliptical fourier descriptors with and without lobe contributions☆13Sep 15, 2020Updated 5 years ago
- Python API and Jupyter widget for Vitessce☆67Jun 4, 2026Updated last week
- Single-Cell Sequencing Quality Control and Processing Software☆30Sep 16, 2019Updated 6 years ago
- Use batch balanced KNN (BBKNN) in R☆14Sep 9, 2025Updated 9 months ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jan 13, 2025Updated last year
- Histology Topography Cytometry Analysis Toolbox☆69Mar 23, 2026Updated 2 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆36Apr 15, 2026Updated last month