nf-core / imcyto
Image Mass Cytometry analysis pipeline
☆25Updated 3 weeks ago
Alternatives and similar repositories for imcyto:
Users that are interested in imcyto are comparing it to the libraries listed below
- Tools to handle IMC data☆23Updated 2 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆62Updated last week
- ☆29Updated 9 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆45Updated 2 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- ☆46Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 8 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆31Updated 9 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆52Updated this week
- ☆34Updated 10 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆33Updated 2 months ago
- A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.☆23Updated 2 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆36Updated 2 months ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆51Updated 2 years ago
- Histology Topography Cytometry Analysis Toolbox☆66Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆23Updated 6 months ago
- ☆25Updated 4 months ago
- Interactive applications of stlearn☆16Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆39Updated 3 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆105Updated this week
- ☆32Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆74Updated last month
- ☆12Updated 2 years ago
- Identification of spatial homogeneous regions☆19Updated last month
- Python package for reading imaging mass cytometry (IMC) files☆13Updated last week
- Tools for analyzing Slide-seq data☆31Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆25Updated 4 months ago
- ☆31Updated last month
- ☆14Updated 2 years ago
- An R package for performing cell typing in SMI and other single cell data☆33Updated 2 months ago