Alternatives and similar repositories for intro-to-deepcell:

Users that are interested in intro-to-deepcell are comparing it to the libraries listed below

• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆78Updated last year
• instanseg / instanseg
  ☆144Updated this week
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆81Updated 7 months ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆91Updated 4 months ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆67Updated 5 months ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆120Updated last month
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆81Updated 3 months ago
• KerenLab / CellSighter
  ☆30Updated last year
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆42Updated this week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆28Updated last month
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆39Updated 7 months ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆146Updated this week
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆50Updated 11 months ago
• ashleylk / CODA
  version 1 scripts for CODA
  ☆43Updated 9 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆49Updated last month
• fish-quant / ComSeg
  comseg
  ☆19Updated 3 weeks ago
• vanvalenlab / deepcell-tf
  Deep Learning Library for Single Cell Analysis
  ☆441Updated 6 months ago
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆25Updated last month
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆23Updated 2 months ago
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• MarkZaidi / Universal-StarDist-for-QuPath
  Transfer trained StarDist models across imaging modalities
  ☆3Updated 5 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆66Updated 5 months ago
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods
  ☆59Updated 2 weeks ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆99Updated last month
• peng-lab / BaSiCPy
  ☆68Updated 2 months ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆71Updated last week
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆113Updated 2 months ago
• okunator / cellseg_gsontools
  Feature extraction from GEOJson nuclei and tissue segmentation maps
  ☆14Updated 6 months ago