Alternatives and similar repositories for intro-to-deepcell:

Users that are interested in intro-to-deepcell are comparing it to the libraries listed below

• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆77Updated 11 months ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆118Updated this week
• instanseg / instanseg
  ☆135Updated this week
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆49Updated last week
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆86Updated 3 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆81Updated 6 months ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆79Updated 2 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆49Updated 10 months ago
• BodenmillerGroup / ImcSegmentationPipeline
  A pixel classification based multiplexed image segmentation pipeline
  ☆86Updated last year
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆67Updated 4 months ago
• vanvalenlab / publication-figures
  Scripts capable of re-creating figures from Van Valen Lab publications
  ☆18Updated 2 years ago
• ashleylk / CODA
  version 1 scripts for CODA
  ☆41Updated 8 months ago
• KerenLab / CellSighter
  ☆29Updated last year
• fish-quant / ComSeg
  comseg
  ☆17Updated last week
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆75Updated 4 months ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆143Updated this week
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆83Updated this week
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆110Updated last month
• vanvalenlab / deepcell-tf
  Deep Learning Library for Single Cell Analysis
  ☆434Updated 5 months ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆58Updated last year
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆94Updated last week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆28Updated 2 months ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆23Updated last month
• SBU-BMI / u24_lymphocyte
  ☆30Updated 4 years ago
• peng-lab / BaSiCPy
  ☆68Updated last month
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆35Updated 6 months ago
• owkin / HE2RNA_code
  Train a model to predict gene expression from histology slides.
  ☆94Updated 2 years ago
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• MarkZaidi / Universal-StarDist-for-QuPath
  Transfer trained StarDist models across imaging modalities
  ☆1Updated 4 months ago
• MarkZaidi / QuASI
  List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images
  ☆24Updated 2 years ago