A pixel classification based multiplexed image segmentation pipeline
☆107Dec 5, 2023Updated 2 years ago
Alternatives and similar repositories for ImcSegmentationPipeline
Users that are interested in ImcSegmentationPipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellProfiler plugins for multiplexed image analysis☆12Feb 16, 2021Updated 5 years ago
- Tools to handle IMC data☆25Mar 31, 2022Updated 4 years ago
- R package for visualization of highly multiplexed imaging data☆36May 27, 2025Updated 11 months ago
- A toolkit for processing multiplexed tissue images☆69Apr 27, 2026Updated last week
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated 11 months ago
- CODEX data processing code☆12Jul 1, 2025Updated 10 months ago
- ☆18Apr 5, 2024Updated 2 years ago
- Imaging Mass Cytometry (IMC) file type support for napari☆13Oct 19, 2023Updated 2 years ago
- Histology Topography Cytometry Analysis Toolbox☆69Mar 23, 2026Updated last month
- ☆11Mar 2, 2021Updated 5 years ago
- R based workflow for multiplexed imaging data☆37Mar 20, 2026Updated last month
- An R package for handling and analysing imaging mass cytometry data☆31Apr 24, 2026Updated last week
- Integrated pipeline for multiplexed image analysis☆105Jan 7, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multiple-choice microscopy pipeline☆149Feb 27, 2026Updated 2 months ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Python package for reading imaging mass cytometry (IMC) files☆18Apr 27, 2026Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Jun 25, 2025Updated 10 months ago
- Spatial Single-Cell Analysis Toolkit☆111Mar 11, 2026Updated last month
- An introduction to deepcell and deep learning☆155Oct 21, 2024Updated last year
- Package for analysis and experimental design of multiplexed imaging data☆12Mar 3, 2025Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆43Mar 2, 2025Updated last year
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Jan 9, 2026Updated 3 months ago
- Deep Learning Library for Single Cell Analysis☆474Aug 30, 2024Updated last year
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆53May 20, 2022Updated 3 years ago
- ☆43Apr 13, 2026Updated 3 weeks ago
- ☆11Feb 24, 2026Updated 2 months ago
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆69Sep 19, 2025Updated 7 months ago
- ☆11May 30, 2023Updated 2 years ago
- ☆37Dec 13, 2023Updated 2 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆12Mar 3, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cytometry dATa anALYsis Tools☆76Apr 28, 2026Updated last week
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 11 months ago
- ☆35Jan 18, 2023Updated 3 years ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated 2 years ago
- ☆71Jan 18, 2023Updated 3 years ago
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- version 1 scripts for CODA☆63May 7, 2024Updated last year