nghiavtr / FuSeq_WES
☆10Updated last year
Alternatives and similar repositories for FuSeq_WES:
Users that are interested in FuSeq_WES are comparing it to the libraries listed below
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆11Updated last year
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Workflow for Sequenza, cellularity and ploidy☆19Updated 7 months ago
- ☆13Updated 7 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- Codes and Data for FFPEsig manuscript☆15Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- ☆21Updated 2 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- ☆11Updated 2 years ago
- RNA editing tests☆16Updated 4 years ago
- ☆21Updated 8 months ago
- Enabling differential allele-specific analysis☆11Updated last month
- cnv-seq with custom bugfix☆10Updated 11 years ago
- ☆12Updated 10 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- ☆24Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- ☆19Updated 4 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- ☆23Updated 3 years ago
- ☆13Updated 7 months ago