nghiavtr / FuSeq_WESLinks
☆11Updated 2 years ago
Alternatives and similar repositories for FuSeq_WES
Users that are interested in FuSeq_WES are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- ☆17Updated 11 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆11Updated 4 years ago
- Micro DNA identification☆24Updated 3 years ago
- ☆23Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated last month
- An R package for predicting HR deficiency from mutation contexts☆28Updated 5 months ago
- ☆11Updated 2 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated 4 months ago
- ☆13Updated 7 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- ☆13Updated last month
- Codes and Data for FFPEsig manuscript☆17Updated last year
- ☆25Updated last year
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆23Updated 8 months ago
- Script used to identify de novo variants from sequencing data.☆12Updated 8 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- ☆13Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆20Updated 6 years ago
- ☆21Updated 4 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 7 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago