mskcc / lohhlaLinks
Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
☆32Updated 2 years ago
Alternatives and similar repositories for lohhla
Users that are interested in lohhla are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated last year
- ☆13Updated 8 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- ☆39Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- Utility functions for FACETS☆39Updated 3 months ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- ☆26Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆37Updated 4 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20Updated 6 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- ☆36Updated 6 years ago
- ☆33Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆45Updated 8 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- ☆23Updated 2 months ago
- ☆23Updated 4 years ago
- Fork of the Polysolver project☆33Updated 6 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 3 weeks ago
- RNA editing tests☆17Updated 5 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Micro DNA identification☆23Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago