Codes and Data for FFPEsig manuscript
☆16Jan 17, 2024Updated 2 years ago
Alternatives and similar repositories for FFPEsig
Users that are interested in FFPEsig are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆52Oct 4, 2026Updated 3 weeks ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆122Oct 18, 2026Updated 2 weeks ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆80Aug 26, 2026Updated 2 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆27Aug 31, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆25Sep 28, 2026Updated last month
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆22May 9, 2019Updated 7 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- ☆10Jan 21, 2023Updated 3 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 7 years ago
- ☆19Jan 30, 2023Updated 3 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- ☆28Updated this week
- A quick recap of widely used differential analyses methods in R for RNA-seq experiments☆16Dec 7, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- Supporting code and materials for GATK gCNV publication☆12Jul 13, 2022Updated 4 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆187Sep 29, 2026Updated last month
- R package containing useful functions for mutational signature analysis☆90Oct 26, 2026Updated last week
- Clonal structure identification through penalizing pairwise differences☆11Sep 29, 2026Updated last month
- Various algorithms for analysing genomics data☆295Updated this week
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Oct 12, 2024Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Nov 20, 2020Updated 5 years ago
- ☆12Apr 25, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15May 8, 2015Updated 11 years ago
- An R package to time somatic mutations☆72Dec 12, 2020Updated 5 years ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆107Nov 22, 2022Updated 3 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- Gain biological insights using LLM.☆14Jan 26, 2026Updated 9 months ago
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- ☆17Aug 11, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆11May 21, 2024Updated 2 years ago
- ☆12Aug 6, 2024Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Overview of GDC Harmonization Workflows☆43May 5, 2026Updated 5 months ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Oct 13, 2026Updated 3 weeks ago
- ☆27May 8, 2022Updated 4 years ago
- ☆24Feb 22, 2023Updated 3 years ago