QingliGuo / FFPEsig
Codes and Data for FFPEsig manuscript
☆15Updated last year
Alternatives and similar repositories for FFPEsig:
Users that are interested in FFPEsig are comparing it to the libraries listed below
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- DriverPower☆26Updated 3 weeks ago
- ☆34Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆28Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- ☆11Updated last year
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆12Updated last week
- An R package for predicting HR deficiency from mutation contexts☆27Updated this week
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 3 months ago
- ☆13Updated 7 years ago
- ☆10Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated last year
- Multi-sample cancer phylogeny reconstruction☆34Updated 7 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 7 months ago
- MSKCC Reis-Filho Lab pipeline thingy☆16Updated 6 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- RNA editing tests☆16Updated 4 years ago
- Filter and prioritize fusion calls☆20Updated 4 months ago
- ☆23Updated 3 years ago