GuanLab / FastClone_GuanLab
☆15Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for FastClone_GuanLab
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆37Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- RNA editing tests☆16Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 5 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- ☆11Updated last year
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- Codes and Data for FFPEsig manuscript☆15Updated 9 months ago
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated this week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆50Updated this week
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆28Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆30Updated 4 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆18Updated last month
- ☆17Updated 5 years ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 2 years ago
- An R package to time somatic mutations☆59Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆14Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- ☆14Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆20Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆19Updated 2 years ago
- ☆31Updated 5 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆13Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 4 months ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago