☆16Aug 11, 2021Updated 4 years ago
Alternatives and similar repositories for FastClone_GuanLab
Users that are interested in FastClone_GuanLab are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jan 30, 2023Updated 3 years ago
- ☆11May 26, 2023Updated 2 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated 2 years ago
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 4 months ago
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data☆11Jul 13, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 11 months ago
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- ☆11May 21, 2024Updated last year
- hands-on for NGS/SNParray CNV call trainning☆20Jun 13, 2022Updated 3 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- visualize CNV data from targeted capture based sequencing data☆35May 10, 2021Updated 4 years ago
- ☆17Sep 16, 2021Updated 4 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Feb 25, 2025Updated last year
- ☆16May 13, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆11Jun 29, 2021Updated 4 years ago
- Quality control for phylogenetic analyses☆13Mar 16, 2026Updated 3 weeks ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- ☆12May 14, 2024Updated last year
- A python interface for the CIViC db application☆12Updated this week
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 8 months ago
- This is the repository for SeCNV, a single cell copy number profiling tool.☆12Dec 12, 2024Updated last year
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆23Jun 14, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- InstaPrism is an R package for fast implementation of BayesPrism☆52Jun 3, 2024Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated last year
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 10 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated last year
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 3 years ago
- ☆23May 31, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast implementation of the Neighbour-Joining method for phylogenetic inference☆18Sep 10, 2024Updated last year
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆11Feb 27, 2026Updated last month
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆17Mar 18, 2023Updated 3 years ago
- Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries☆11Jan 26, 2025Updated last year
- ☆10Sep 26, 2019Updated 6 years ago
- An academic manuscript template with writing tips in both LaTeX and MS Word format generated by the Capra Lab (2/2022)☆22Nov 13, 2023Updated 2 years ago
- Somatic point mutation caller☆34Jan 7, 2026Updated 3 months ago