ImperialCardioGenetics / UTRannotator
VEP Plugin to annotate high-impact five prime UTR variants
☆27Updated 8 months ago
Alternatives and similar repositories for UTRannotator
Users that are interested in UTRannotator are comparing it to the libraries listed below
Sorting:
- ☆35Updated 2 years ago
- QDNAseq package for Bioconductor☆50Updated 9 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated 2 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆43Updated last month
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- ☆39Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 months ago
- for visual evaluation of read support for structural variation☆52Updated 11 months ago
- ☆25Updated 5 months ago
- ☆38Updated 8 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- ⛏ HLA predictions from NGS shotgun data☆53Updated last month
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 3 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- ☆43Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- TIDDIT - structural variant calling☆73Updated last month
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆52Updated last month
- ☆39Updated 8 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago