ferrannadeu / IgCallerLinks
Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in lymphoid neoplasms.
☆20Updated 2 years ago
Alternatives and similar repositories for IgCaller
Users that are interested in IgCaller are comparing it to the libraries listed below
Sorting:
- QDNAseq.hg38: QDNAseq bin annotation for hg38☆16Updated last month
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- QDNAseq package for Bioconductor☆53Updated last year
- ☆38Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- ☆23Updated 11 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- A software for calculating telomere length☆72Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 5 months ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- Genomic Association Tester☆34Updated 2 years ago
- ☆26Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆55Updated this week
- BigWig and BAM utilities☆98Updated last year
- ☆34Updated last week
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆21Updated last month
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆23Updated 2 years ago