Alternatives and similar repositories for leeHom

Users that are interested in leeHom are comparing it to the libraries listed below

• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated 2 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆33Updated last month
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 8 months ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆30Updated 3 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆51Updated 2 months ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆22Updated 3 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆31Updated 4 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆48Updated 3 weeks ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• agshumate / LiftoffTools
  ☆27Updated 2 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆30Updated 3 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• sestaton / tephra
  A tool for discovering transposable elements and describing patterns of genome evolution
  ☆31Updated 2 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆36Updated 2 years ago
• OmarOakheart / nPhase
  Ploidy agnostic phasing pipeline and algorithm
  ☆46Updated last year
• jdaron / CLARI-TE
  ☆11Updated 10 years ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆20Updated last year
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆56Updated 2 years ago
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆32Updated 5 years ago