grenaud / leeHom
Bayesian reconstruction of ancient DNA fragments
☆28Updated 8 months ago
Alternatives and similar repositories for leeHom:
Users that are interested in leeHom are comparing it to the libraries listed below
- Improved Phased Assembler☆28Updated 3 years ago
- ☆30Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- The MafFilter genome alignment processor☆17Updated 3 weeks ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 6 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- ☆35Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- genomic alignment similarity search tool☆18Updated 10 months ago
- ☆23Updated last year
- ☆23Updated 7 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Visualising discordant reads☆15Updated 9 years ago
- ☆16Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆42Updated 11 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- General purpose population genetics software☆12Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago