Bayesian reconstruction of ancient DNA fragments
☆30Aug 6, 2024Updated last year
Alternatives and similar repositories for leeHom
Users that are interested in leeHom are comparing it to the libraries listed below
Sorting:
- Genome Assembly 102☆17Apr 23, 2025Updated 10 months ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- The SPrime program identifies variants that are introgressed from archaic populations.☆27May 21, 2022Updated 3 years ago
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 8 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated 11 months ago
- ☆38Dec 29, 2025Updated 2 months ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated last year
- Gene copy number prediction from k-mer frequencies☆15Jul 29, 2024Updated last year
- Accelerated Bayesian inference of population size history from whole genome data.☆34Sep 29, 2025Updated 5 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated 11 months ago
- ☆21Jan 11, 2024Updated 2 years ago
- Variant annotation and merging pipeline☆43Jul 22, 2025Updated 7 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Feb 28, 2026Updated 2 weeks ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 4 months ago
- Useful small programs☆26Jan 11, 2013Updated 13 years ago
- A Unified Genealogy of Modern and Ancient Humans☆20Dec 10, 2025Updated 3 months ago
- Targeted genotyper for complex polymorphic genes☆38Feb 27, 2026Updated 3 weeks ago
- ☆26Mar 26, 2024Updated last year
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆16May 19, 2023Updated 2 years ago
- ☆13May 27, 2025Updated 9 months ago
- ☆10Jan 18, 2023Updated 3 years ago
- ☆20Apr 15, 2024Updated last year
- Statistical inference of recent positive selection using IBD segments☆14Sep 23, 2025Updated 5 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- ☆13Sep 11, 2025Updated 6 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 11 months ago
- Evaluating genome assemblies☆118Mar 3, 2026Updated 2 weeks ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Jun 14, 2021Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated last month
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 7 months ago
- ☆23Sep 9, 2025Updated 6 months ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago