A visualization tool for exploratory data analysis of metagenomic data
☆40Mar 22, 2022Updated 4 years ago
Alternatives and similar repositories for burrito
Users that are interested in burrito are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Model-based Integration of Metabolite Observations and Species Abundances☆26Feb 21, 2020Updated 6 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 5 years ago
- ☆84Sep 13, 2023Updated 3 years ago
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆43Oct 10, 2025Updated last year
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- Automated taxonomy decoration onto a tree☆19Jul 16, 2026Updated 3 months ago
- VAginaL community state typE Nearest CentroId clAssifier☆25Apr 18, 2023Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆48Nov 9, 2022Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆77Dec 17, 2024Updated last year
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆55Jan 12, 2026Updated 9 months ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- ☆16Jan 21, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17May 22, 2023Updated 3 years ago
- StrainEst - abundance estimation of strains☆19Jan 17, 2020Updated 6 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 3 years ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆14Jun 25, 2019Updated 7 years ago
- k-mers and the like☆22Oct 18, 2026Updated 2 weeks ago
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 9 months ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆26Jun 5, 2026Updated 4 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- ☆14Mar 13, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- microbiome R package☆320Oct 24, 2026Updated last week
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆19Jan 14, 2015Updated 11 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- assemble, annotate, and assess transcriptomes in a single step☆10Mar 16, 2017Updated 9 years ago
- ☆18Feb 19, 2021Updated 5 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆41Aug 7, 2026Updated 2 months ago
- Interactive tree visualizations in Python (powered by Vega).☆11Sep 26, 2019Updated 7 years ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 9 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆651Feb 27, 2026Updated 8 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆66Updated this week
- ☆19Dec 6, 2022Updated 3 years ago
- 🌈 Interactive analysis of metagenomics data☆456Sep 17, 2025Updated last year
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆92Nov 20, 2017Updated 8 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 4 years ago