borenstein-lab / burrito
A visualization tool for exploratory data analysis of metagenomic data
☆37Updated 2 years ago
Alternatives and similar repositories for burrito:
Users that are interested in burrito are comparing it to the libraries listed below
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- ☆23Updated 6 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- ☆45Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated last year
- ☆13Updated last month
- workflows for offline analysis of 16S rRNA Nanopore data☆13Updated last year
- ☆32Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- SHallow shOtGUN profiler☆53Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 10 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆55Updated 5 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 4 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Metagenomics-related extended functionalities to samtools☆20Updated last year
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆52Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 2 months ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- ☆49Updated 10 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- ☆17Updated 2 years ago
- ☆41Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆42Updated 9 months ago