zellerlab / siamcatLinks
R package for Statistical Inference of Associations between Microbial Communities And host phenoType
☆57Updated last year
Alternatives and similar repositories for siamcat
Users that are interested in siamcat are comparing it to the libraries listed below
Sorting:
- gutSMASH☆56Updated last month
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 5 months ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- Metagenomics Workshop☆28Updated 8 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- ☆24Updated 5 years ago
- Statistical analysis for sparse high-throughput sequencing☆70Updated 11 months ago
- ☆57Updated last year
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- Code and analysis results for the CRC shotgun meta-analysis☆38Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆62Updated 3 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- R implementation of the LEfSe method☆61Updated this week
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆49Updated this week
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆47Updated this week
- Bioinformatics Tools☆89Updated last month
- ☆41Updated 8 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- Transform files to the microtable object with microeco package☆28Updated 3 weeks ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 2 years ago