Alternatives and similar repositories for SLIDE

Users that are interested in SLIDE are comparing it to the libraries listed below

• 5c077 / ExpressionDB
  App for hosting gene expression/ontology data with Shiny
  ☆17Updated 7 years ago
• smdabdoub / phylotoast
  Tools for phylogenetic data analysis including visualization and cluster-computing support.
  ☆14Updated 3 years ago
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆68Updated last month
• knightlab-analyses / american-gut-analyses
  ☆15Updated 7 years ago
• olgabot / abi2fastq
  abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ
  ☆11Updated 7 years ago
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 7 years ago
• danknights / mwas
  Perform microbiome-wide association studies with a variety of models
  ☆18Updated 8 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• inutano / docker-ngs-tools
  A catalogue of docker images for NGS data analysis tools
  ☆9Updated 6 years ago
• NCBI-Hackathons / FlowBio
  A fast, easy way to present complex bioinformatics pipelines to biologists
  ☆11Updated 6 years ago
• deweylab / MetaSRA-pipeline
  MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
  ☆43Updated last week
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 3 years ago
• tmbuza / iMAP
  iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
  ☆13Updated last year
• ajrichards / htsint
  A Python library to work with high-throughput sequencing data in the context of data integration
  ☆14Updated 8 years ago
• pamelarussell / github-bioinformatics
  Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"
  ☆32Updated 6 years ago
• DugongBioinformatics / Dugong
  Dugong - Scientific Linux Container
  ☆18Updated 7 years ago
• elixir-europe / BioHackathon
  Repository with information about the BioHackathon hosted in Paris in Nov 2018
  ☆28Updated 4 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• ababaian / bioFreelancers
  Freelance bioinformaticians directory
  ☆9Updated 2 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated last year
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 3 years ago
• idekerlab / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆17Updated 2 years ago
• clintval / cvbio
  Artisanal 🤣 bioinformatics tools and pipelines in Scala
  ☆20Updated 5 years ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• lotharwissler / bioinformatics
  ☆10Updated 12 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago