faylward / pangenomicsLinks
Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.
☆11Updated 4 years ago
Alternatives and similar repositories for pangenomics
Users that are interested in pangenomics are comparing it to the libraries listed below
Sorting:
- Hierarchical clustering of cgMLST☆11Updated last year
- ☆11Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- ☆12Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Repository for general metagenomics Nextflow pipeline☆23Updated 3 weeks ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆48Updated 9 months ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Pipeline for major biological analyses.