Python API for the Interactive Tree of Life (iTOL)
☆39May 1, 2026Updated 2 months ago
Alternatives and similar repositories for itolapi
Users that are interested in itolapi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Mar 18, 2019Updated 7 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆51Jan 19, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Short Read Sequence Typing for Bacterial Pathogens☆148Jun 20, 2021Updated 5 years ago
- PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding☆11Mar 31, 2021Updated 5 years ago
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆20Dec 3, 2024Updated last year
- Generating iToL annotations from Spreadsheet or CSV files☆109May 15, 2020Updated 6 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Jul 13, 2023Updated 2 years ago
- Mycobacterium tuberculosis complex lineage typing☆10Jun 22, 2025Updated last year
- Scan contig files against PubMLST typing schemes☆290Jun 17, 2026Updated 3 weeks ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆74Dec 17, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆128Oct 30, 2023Updated 2 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 5 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Apr 10, 2026Updated 2 months ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆50Feb 20, 2026Updated 4 months ago
- Various scripts and recipes for working with nanopore data☆35Apr 17, 2016Updated 10 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Draw genetic map (linkage map) in R☆14Nov 12, 2017Updated 8 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆124Apr 7, 2021Updated 5 years ago
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Jun 17, 2026Updated 3 weeks ago
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 7 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆14Nov 20, 2025Updated 7 months ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Making bioinformatics fun again☆78May 11, 2026Updated last month
- ☆11Mar 25, 2019Updated 7 years ago
- Use ggplot2 to plot China map, and provide a JSON file of coordinates of major Chinese cities☆28Feb 5, 2018Updated 8 years ago
- The second version of the Kraken taxonomic sequence classification system☆918Jun 24, 2026Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆234Apr 27, 2026Updated 2 months ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago