Alternatives and similar repositories for PLANiTS

Users that are interested in PLANiTS are comparing it to the libraries listed below

• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆13Updated 9 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated 2 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 9 months ago
• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆33Updated last week
• mongiardino / chronospace
  que paquete
  ☆9Updated 11 months ago
• redsnic / WGA-LP
  A pipeline for whole genome assembly
  ☆16Updated 3 years ago
• shenwei356 / easy_sbatch
  easy_sbatch - Batch submitting Slurm jobs with script templates
  ☆17Updated 3 years ago
• DessimozLab / matreex
  ☆16Updated this week
• maxemil / PhyloMagnet
  screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
  ☆11Updated 4 years ago
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated last month
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆22Updated 3 weeks ago
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆22Updated 2 years ago
• xia-lab / Seq2Fun
  ☆16Updated last year
• AliTVTeam / AliTV-perl-interface
  ☆10Updated 3 years ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆14Updated last week
• birneylab / flexlmm
  Flexible linear mixed model framework for Genome Wide Association Studies
  ☆18Updated last month
• guigolab / FA-nf
  Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
  ☆17Updated 3 years ago
• DessimozLab / omamer
  OMAmer - tree-driven and alignment-free protein assignment to sub-families
  ☆18Updated this week
• DRL / kinfin
  Taxon-aware analysis of clustered protein sequences
  ☆31Updated 11 months ago
• bioinfologics / w2rap
  WGS (Wheat) Robust Assembly Pipeline
  ☆22Updated 3 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆20Updated 8 months ago
• MorrellLAB / sequence_handling
  A series of scripts to automate sequence workflows
  ☆19Updated last month
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 9 months ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆38Updated 4 months ago
• rhysf / Diamond2GO
  ☆20Updated 10 months ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 4 years ago