apallavicini / PLANiTSLinks
PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding
☆12Updated 4 years ago
Alternatives and similar repositories for PLANiTS
Users that are interested in PLANiTS are comparing it to the libraries listed below
Sorting:
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆18Updated 3 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 3 years ago
- A Nextflow pipeline for running synteny analysis.☆16Updated 5 months ago
- Nanopore Real-Time Analysis Tool☆15Updated last year
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 5 years ago
- ☆17Updated 4 months ago
- ☆11Updated 4 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 months ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- PanGenomePipeline☆16Updated last year
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated last month
- Infering ancestral synteny with hierarchical orthologous groups☆35Updated last month
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 6 months ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆32Updated last week
- ☆24Updated 7 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- defusion☆14Updated 4 years ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- ☆11Updated 10 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 11 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated last week