vice87 / gam-ngsLinks
Genomic Assemblies Merger for NGS
☆26Updated last year
Alternatives and similar repositories for gam-ngs
Users that are interested in gam-ngs are comparing it to the libraries listed below
Sorting:
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 6 months ago
- De novo VIral Genome Annotator☆21Updated 8 months ago
- blast, shmlast☆22Updated 4 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!☆8Updated 9 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 6 months ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- ☆15Updated 7 years ago
- transposable element typing pipeline☆18Updated last year
- ☆16Updated 7 years ago
- metagenome population recombination rate estimation pipeline☆12Updated 3 weeks ago
- high-throughput primer design and graphical visualization☆9Updated 7 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 8 years ago
- genomic alignment similarity search tool☆18Updated 3 weeks ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Read contamination removal☆25Updated last year
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago