Alternatives and similar repositories for fastlin

Users that are interested in fastlin are comparing it to the libraries listed below

• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated 2 years ago
• somme89 / rapidNJ
  Fast implementation of the Neighbour-Joining method for phylogenetic inference
  ☆18Updated last year
• m-crown / SPEAR
  Systematic ProtEin AnnotatoR
  ☆19Updated 4 months ago
• dib-lab / genome-grist
  map Illumina metagenomes to genomes!
  ☆38Updated 3 weeks ago
• eclarke / komplexity
  A method of assessing sequence complexity based on kmer frequencies
  ☆33Updated 7 years ago
• RIVM-bioinformatics / AmpliGone
  A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
  ☆20Updated 3 months ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆32Updated 2 weeks ago
• sanger-pathogens / pymummer
  Python3 module for running MUMmer and reading the output
  ☆34Updated 10 months ago
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆20Updated last year
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 4 years ago
• SamStudio8 / dehumanizer
  rapidly rid reads of horrid humans
  ☆15Updated 4 years ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆40Updated 4 months ago
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆39Updated 11 months ago
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 6 years ago
• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆38Updated 3 weeks ago
• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆16Updated 8 months ago
• niemasd / ViralConsensus
  Fast viral consensus genome reconstruction
  ☆25Updated last week
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆27Updated last month
• Microbiology / ccontigs
  Detect contigs of complete circular genomes
  ☆23Updated 6 years ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆24Updated 2 weeks ago
• nebiolabs / ampseer
  Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…
  ☆15Updated last year
• nickloman / poredb
  ☆18Updated 8 years ago
• epi2me-labs / kraken2-server
  Kraken2 Server
  ☆23Updated 2 months ago
• phiweger / uv
  Finding prophage regions in bacterial genomes using brute force
  ☆22Updated 3 years ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 4 years ago
• nalarbp / graphsnp
  GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser
  ☆12Updated 4 months ago
• lskatz / pdtk
  NCBI Pathogen Detection Portal toolkit
  ☆11Updated 2 years ago
• taxprofiler / taxpasta
  TAXnomic Profile Aggregation and STAndardisation
  ☆41Updated 2 months ago
• hzi-bifo / Haploflow
  ☆30Updated 2 years ago
• colindaven / guppy_on_slurm
  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
  ☆16Updated last year